RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MSRB1Q9NZV6 116 aa14.59□□□□□ -0.07
CLN3-212ENST00000564574 STAB2Q8WWQ8 2551 aa14.58□□□□□ -0.08
CLN3-212ENST00000564574 TRAV10A0A0B4J240 114 aa14.58□□□□□ -0.08
CLN3-212ENST00000564574 SMIM17P0DL12 118 aa14.58□□□□□ -0.08
CLN3-212ENST00000564574 ZNF479Q96JC4 524 aa14.58□□□□□ -0.08
CLN3-212ENST00000564574 WWC2-AS2Q96NR7 200 aa14.58□□□□□ -0.08
CLN3-212ENST00000564574 S100A8P05109 93 aa14.57□□□□□ -0.08
CLN3-212ENST00000564574 CRYGDP07320 174 aa14.57□□□□□ -0.08
CLN3-212ENST00000564574 IGHV3-53P01767 116 aa14.56□□□□□ -0.08
CLN3-212ENST00000564574 SLAQ13239 276 aa14.56□□□□□ -0.08
CLN3-212ENST00000564574 UFSP1Q6NVU6 142 aa14.56□□□□□ -0.08
CLN3-212ENST00000564574 MRPL54Q6P161 138 aaKnown RBP14.56□□□□□ -0.08
CLN3-212ENST00000564574 DPH3P1Q9H4G8 78 aa14.56□□□□□ -0.08
CLN3-212ENST00000564574 DEFB131BA0A096LNP1 70 aa14.55□□□□□ -0.08
CLN3-212ENST00000564574 A0A1B0GXF2 115 aa14.55□□□□□ -0.08
CLN3-212ENST00000564574 HBBP68871 147 aa14.55□□□□□ -0.08
CLN3-212ENST00000564574 FAM74A4Q5TZK3 123 aa14.55□□□□□ -0.08
CLN3-212ENST00000564574 C14orf178Q8N769 122 aaPredicted RBP14.55□□□□□ -0.08
CLN3-212ENST00000564574 SAMD10Q9BYL1 202 aa14.55□□□□□ -0.08
CLN3-212ENST00000564574 TMEM191AQ9H0A3 160 aa14.55□□□□□ -0.08
CLN3-212ENST00000564574 KIF25-AS1Q9Y6Z4 181 aa14.55□□□□□ -0.08
CLN3-212ENST00000564574 A0A087WWL8 130 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 TRGV4A0A0C4DH28 118 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 F5H768 121 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 HTN3P15516 51 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 EVI2AP22794 236 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 FHL2Q14192 279 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 PHLDA1Q8WV24 401 aaPredicted RBP14.54□□□□□ -0.08
CLN3-212ENST00000564574 SMCO4Q9NRQ5 59 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 URGCP-MRPS24S4R325 110 aa14.54□□□□□ -0.08
CLN3-212ENST00000564574 HOXA5P20719 270 aa14.53□□□□□ -0.08
CLN3-212ENST00000564574 RASL11AQ6T310 242 aa14.53□□□□□ -0.08
CLN3-212ENST00000564574 GATD1Q8NB37 220 aa14.53□□□□□ -0.08
CLN3-212ENST00000564574 GATA1P15976 413 aaPredicted RBP14.52□□□□□ -0.09
CLN3-212ENST00000564574 CAMPP49913 170 aa14.52□□□□□ -0.09
CLN3-212ENST00000564574 PRO0255Q9UI72 69 aa14.52□□□□□ -0.09
CLN3-212ENST00000564574 IGHV3-73A0A0B4J1V6 119 aa14.51□□□□□ -0.09
CLN3-212ENST00000564574 LINC00315P59091 139 aa14.51□□□□□ -0.09
CLN3-212ENST00000564574 RAB4BP61018 213 aa14.51□□□□□ -0.09
CLN3-212ENST00000564574 ZNF56Q15929 161 aa14.51□□□□□ -0.09
CLN3-212ENST00000564574 FAM210BQ96KR6 192 aa14.51□□□□□ -0.09
CLN3-212ENST00000564574 TRBV6-4A0A1B0GX49 114 aa14.5□□□□□ -0.09
CLN3-212ENST00000564574 NUPR2A6NF83 97 aa14.5□□□□□ -0.09
CLN3-212ENST00000564574 ELOBQ15370 118 aa14.5□□□□□ -0.09
CLN3-212ENST00000564574 COX19Q49B96 90 aa14.5□□□□□ -0.09
CLN3-212ENST00000564574 MUC7Q8TAX7 377 aa14.5□□□□□ -0.09
CLN3-212ENST00000564574 HHLA3Q9XRX5 114 aa14.5□□□□□ -0.09
CLN3-212ENST00000564574 DNAH7Q8WXX0 4024 aa14.5□□□□□ -0.09
CLN3-212ENST00000564574 TRBV24-1A0A075B6N3 115 aa14.49□□□□□ -0.09
CLN3-212ENST00000564574 MGPP08493 103 aa14.49□□□□□ -0.09
CLN3-212ENST00000564574 CRYBA4P53673 196 aa14.49□□□□□ -0.09
CLN3-212ENST00000564574 CEMP1Q6PRD7 247 aaPredicted RBP14.49□□□□□ -0.09
CLN3-212ENST00000564574 FRZBQ92765 325 aa14.49□□□□□ -0.09
CLN3-212ENST00000564574 F5H697 171 aa14.48□□□□□ -0.09
CLN3-212ENST00000564574 H3BNG1 76 aa14.48□□□□□ -0.09
CLN3-212ENST00000564574 RHOHQ15669 191 aa14.48□□□□□ -0.09
CLN3-212ENST00000564574 CBLN2Q8IUK8 224 aa14.48□□□□□ -0.09
CLN3-212ENST00000564574 K7EQD1 137 aa14.47□□□□□ -0.09
CLN3-212ENST00000564574 FAM104BQ5XKR9 115 aa14.47□□□□□ -0.09
CLN3-212ENST00000564574 TMEM88Q6PEY1 159 aa14.47□□□□□ -0.09
CLN3-212ENST00000564574 YPEL4Q96NS1 127 aa14.47□□□□□ -0.09
CLN3-212ENST00000564574 TRAV26-1A0A087WT03 109 aa14.46□□□□□ -0.09
CLN3-212ENST00000564574 H7C1H1 209 aa14.46□□□□□ -0.09
CLN3-212ENST00000564574 PAX4O43316 350 aa14.46□□□□□ -0.09
CLN3-212ENST00000564574 SLC25A29Q8N8R3 303 aa14.46□□□□□ -0.09
CLN3-212ENST00000564574 PRADC1Q9BSG0 188 aa14.46□□□□□ -0.09
CLN3-212ENST00000564574 KLK5Q9Y337 293 aaPredicted RBP14.46□□□□□ -0.09
CLN3-212ENST00000564574 TGIF2-C20orf24A0A0A6YYL0 155 aa14.45□□□□□ -0.1
CLN3-212ENST00000564574 RAB4AP20338 218 aa14.45□□□□□ -0.1
CLN3-212ENST00000564574 Q6ZSN1 163 aa14.45□□□□□ -0.1
CLN3-212ENST00000564574 AMN1Q8IY45 258 aa14.45□□□□□ -0.1
CLN3-212ENST00000564574 RNF185Q96GF1 192 aa14.45□□□□□ -0.1
CLN3-212ENST00000564574 TRBV10-1A0A0K0K1A3 114 aa14.44□□□□□ -0.1
CLN3-212ENST00000564574 SUMO4Q6EEV6 95 aa14.44□□□□□ -0.1
CLN3-212ENST00000564574 MRAP2Q96G30 205 aa14.44□□□□□ -0.1
CLN3-212ENST00000564574 VSIG2Q96IQ7 327 aa14.44□□□□□ -0.1
CLN3-212ENST00000564574 GNB1LQ9BYB4 327 aa14.44□□□□□ -0.1
CLN3-212ENST00000564574 A0A0J9YY99 117 aa14.43□□□□□ -0.1
CLN3-212ENST00000564574 HLA-DQA1P01909 254 aa14.43□□□□□ -0.1
CLN3-212ENST00000564574 TMEM136Q6ZRR5 245 aa14.43□□□□□ -0.1
CLN3-212ENST00000564574 C15orf53Q8NAA6 179 aa14.43□□□□□ -0.1
CLN3-212ENST00000564574 IGLL5B9A064 214 aa14.42□□□□□ -0.1
CLN3-212ENST00000564574 C3orf84H3BNL1 204 aa14.42□□□□□ -0.1
CLN3-212ENST00000564574 M0QY20 66 aa14.42□□□□□ -0.1
CLN3-212ENST00000564574 MT-ND6P03923 174 aa14.42□□□□□ -0.1
CLN3-212ENST00000564574 TCTAP57738 103 aa14.42□□□□□ -0.1
CLN3-212ENST00000564574 GYPEP15421 78 aa14.41□□□□□ -0.1
CLN3-212ENST00000564574 MRPL51Q4U2R6 128 aaKnown RBP14.41□□□□□ -0.1
CLN3-212ENST00000564574 DNAJC30Q96LL9 226 aa14.41□□□□□ -0.1
CLN3-212ENST00000564574 ICOSQ9Y6W8 199 aa14.41□□□□□ -0.1
CLN3-212ENST00000564574 SCO1O75880 301 aa14.4□□□□□ -0.1
CLN3-212ENST00000564574 MRPL23Q16540 153 aaKnown RBP14.4□□□□□ -0.1
CLN3-212ENST00000564574 ZFAND6Q6FIF0 208 aa14.4□□□□□ -0.1
CLN3-212ENST00000564574 DYNC2H1Q8NCM8 4307 aaKnown RBP14.39□□□□□ -0.11
CLN3-212ENST00000564574 PPP1R17O96001 155 aa14.39□□□□□ -0.11
CLN3-212ENST00000564574 PPBPP02775 128 aa14.39□□□□□ -0.11
CLN3-212ENST00000564574 RPL36AP83881 106 aaKnown RBP14.39□□□□□ -0.11
CLN3-212ENST00000564574 RPL36ALQ969Q0 106 aaKnown RBP14.39□□□□□ -0.11
CLN3-212ENST00000564574 NIT2Q9NQR4 276 aa14.39□□□□□ -0.11
CLN3-212ENST00000564574 TRAV26-2A0A0B4J265 109 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms