RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 REG3GQ6UW15 175 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 CLPSL2Q6UWE3 100 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 SEC22CQ9BRL7 303 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 CHCHD5Q9BSY4 110 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 AP5S1Q9NUS5 200 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 PSG8Q9UQ74 426 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 TRBV7-3A0A075B6L6 115 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 TRAV6A0A075B6T7 132 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 TRBV6-8A0A0A6YYG3 113 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 TRBV10-1A0A0K0K1A3 114 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 SERTM2A0A1B0GWG4 89 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 A0A1W2PPV4 95 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 H3BVH4 76 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 PTTG1O95997 202 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 UBE2D3P61077 147 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 PKIAP61925 76 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 CNBPP62633 177 aaKnown RBP4.61□□□□□ -1.67
VPS4A-203ENST00000564399 UBE2D2P62837 147 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 PRR3P79522 188 aaKnown RBP4.61□□□□□ -1.67
VPS4A-203ENST00000564399 IL15RAQ13261 267 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 PQLC2Q6ZP29 291 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 PRNTQ86SH4 94 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 OR11H4Q8NGC9 324 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 SPACA4Q8TDM5 124 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 PLAC8Q9NZF1 115 aa4.61□□□□□ -1.67
VPS4A-203ENST00000564399 IGKV3D-20A0A0C4DH25 116 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 HMGB3O15347 200 aaKnown RBP4.6□□□□□ -1.67
VPS4A-203ENST00000564399 TCRAP04437 139 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 FLI1Q01543 452 aaPredicted RBP4.6□□□□□ -1.67
VPS4A-203ENST00000564399 MAJINQ3KP22 176 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 SPINK6Q6UWN8 80 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 LINC00269Q8N2A0 174 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.6□□□□□ -1.67
VPS4A-203ENST00000564399 C5orf17Q8NAS9 161 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 LYPD6BQ8NI32 183 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 SCGB1C1Q8TD33 95 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 IL36BQ9NZH7 164 aa4.6□□□□□ -1.67
VPS4A-203ENST00000564399 IGLV10-54A0A075B6I4 117 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 IGKV2-24A0A0C4DH68 120 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 GRIFINA4D1Z8 144 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 CCDC160A6NGH7 325 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 FABP5P3A8MUU1 101 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 B4DEV8 164 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 M0R381 172 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 TCRBP04435 133 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 ARMS2P0C7Q2 107 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 LRRC37A5PQ49AS3 106 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 SAPCD1Q5SSQ6 148 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 KRTAP26-1Q6PEX3 210 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 SFRP2Q96HF1 295 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 NUDT15Q9NV35 164 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 PRR34Q9NV39 138 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 PHLDA3Q9Y5J5 127 aa4.59□□□□□ -1.67
VPS4A-203ENST00000564399 A0A0U1RQV1 116 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 M0R036 132 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 LYRM1O43325 122 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 SLPIP03973 132 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 TPT1P13693 172 aaKnown RBP4.58□□□□□ -1.68
VPS4A-203ENST00000564399 RBX1P62877 108 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 SUMO1P63165 101 aaKnown RBP4.58□□□□□ -1.68
VPS4A-203ENST00000564399 COX6A2Q02221 97 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 GAGE6Q13070 117 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 STPG4Q8N801 248 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 SMIM3Q9BZL3 60 aa4.58□□□□□ -1.68
VPS4A-203ENST00000564399 TRAV34A0A0B4J273 112 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 SIX6O95475 246 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 H2AFB2P0C5Z0 115 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 ARL14EPLP0DKL9 152 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 IL7P13232 177 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 RAB5CP51148 216 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 RAB2AP61019 212 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 REG3AQ06141 175 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 ZNF56Q15929 161 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 ZFP82Q8N141 532 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 NEXN-AS1Q8NBZ9 246 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 OR10G8Q8NGN5 311 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 SDHCQ99643 169 aaPredicted RBP4.57□□□□□ -1.68
VPS4A-203ENST00000564399 EPDR1Q9UM22 224 aa4.57□□□□□ -1.68
VPS4A-203ENST00000564399 TRBV25-1A0A075B6N4 114 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 TMSB15BA0A087X1C1 80 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 TRAV8-4A0A0B4J246 113 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 MUC21A0A0G2JKD1 596 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 H0YIZ8 118 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 H7C1H1 209 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 PLA2G10O15496 165 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 NDUFS6O75380 124 aaKnown RBP4.56□□□□□ -1.68
VPS4A-203ENST00000564399 IFNA7P01567 189 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 P01737 135 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 TMEM97Q5BJF2 176 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 NTM-AS1Q6ZSK4 140 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 PRSS3P2Q8NHM4 247 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 HSPB11Q9Y547 144 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 ARL2-SNX15V9GYD0 113 aa4.56□□□□□ -1.68
VPS4A-203ENST00000564399 LPAP08519 4548 aa4.55□□□□□ -1.68
VPS4A-203ENST00000564399 FAM231BA6NCW3 169 aa4.55□□□□□ -1.68
VPS4A-203ENST00000564399 KRBOX1C9JBD0 128 aa4.55□□□□□ -1.68
VPS4A-203ENST00000564399 F5H697 171 aa4.55□□□□□ -1.68
VPS4A-203ENST00000564399 GZMBP10144 247 aa4.55□□□□□ -1.68
VPS4A-203ENST00000564399 GCHFRP30047 84 aa4.55□□□□□ -1.68
VPS4A-203ENST00000564399 RPS10P46783 165 aaKnown RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms