RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 UBE2D3P61077 147 aa10.49□□□□□ -0.73
VPS9D1-202ENST00000561976 UBE2D2P62837 147 aa10.49□□□□□ -0.73
VPS9D1-202ENST00000561976 KIF25-AS1Q9Y6Z4 181 aa10.49□□□□□ -0.73
VPS9D1-202ENST00000561976 ATRXP46100 2492 aa10.49□□□□□ -0.73
VPS9D1-202ENST00000561976 MUC4Q99102 2169 aa10.49□□□□□ -0.73
VPS9D1-202ENST00000561976 POLR2KP53803 58 aaKnown RBP10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 KLRB1Q12918 225 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 FAM74A4Q5TZK3 123 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 TMEM141Q96I45 108 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 IGHV4OR15-8A0A075B7B6 117 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 A0A087WW49 117 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 SDHAF1A6NFY7 115 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 TSPEAR-AS2P59090 65 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 APRG1Q8IVJ8 170 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 TCL1BO95988 128 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 POM121L12Q8N7R1 296 aa10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 ZNF256Q9Y2P7 627 aaPredicted RBP10.48□□□□□ -0.73
VPS9D1-202ENST00000561976 TRAV12-3A0A0B4J271 114 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 NXPH4O95158 308 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 SPINK8P0C7L1 97 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 CFC1BP0CG36 223 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 CFC1P0CG37 223 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 LGALS3P17931 250 aaKnown RBP10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 CDIP1Q9H305 208 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 IGHV3-30P01768 117 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 IGHV3-30-5P0DP03 117 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 RPL32P62910 135 aaKnown RBP10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 TCTEX1D4Q5JR98 221 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 ZNRF2Q8NHG8 242 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 USMG5Q96IX5 58 aa10.47□□□□□ -0.73
VPS9D1-202ENST00000561976 TRBV7-9A0A0J9YWB2 115 aa10.46□□□□□ -0.73
VPS9D1-202ENST00000561976 CRIP2P52943 208 aaPredicted RBP10.46□□□□□ -0.73
VPS9D1-202ENST00000561976 SLC25A29Q8N8R3 303 aa10.46□□□□□ -0.73
VPS9D1-202ENST00000561976 PPDPFLQ8WWR9 84 aa10.46□□□□□ -0.73
VPS9D1-202ENST00000561976 TIMM17AQ99595 171 aa10.46□□□□□ -0.73
VPS9D1-202ENST00000561976 J3QQQ9 107 aa10.46□□□□□ -0.74
VPS9D1-202ENST00000561976 TEN1Q86WV5 123 aa10.46□□□□□ -0.74
VPS9D1-202ENST00000561976 TRBV20-1A0A075B6N2 111 aa10.45□□□□□ -0.74
VPS9D1-202ENST00000561976 A8MWV9 139 aa10.45□□□□□ -0.74
VPS9D1-202ENST00000561976 IGHV1-69P01742 117 aa10.45□□□□□ -0.74
VPS9D1-202ENST00000561976 C10orf126Q8N4M7 172 aa10.45□□□□□ -0.74
VPS9D1-202ENST00000561976 KLLNB2CW77 178 aa10.45□□□□□ -0.74
VPS9D1-202ENST00000561976 PRO1854Q9UHT4 67 aa10.45□□□□□ -0.74
VPS9D1-202ENST00000561976 MT-ATP8P03928 68 aa10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 ZNF56Q15929 161 aa10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 ZNF876PQ49A33 203 aa10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 CARD19Q96LW7 228 aa10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 DAZ1Q9NQZ3 744 aaKnown RBP10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 ID1P41134 155 aa10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 FHL3Q13643 280 aa10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 OPRPNQ99935 248 aaPredicted RBP10.44□□□□□ -0.74
VPS9D1-202ENST00000561976 EDN2P20800 178 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 RAX2Q96IS3 184 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 IGF2RP11717 2491 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 SPTAN1Q13813 2472 aaKnown RBP10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 IGHV3-64A0A075B6Q5 118 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 H7C2G1 150 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 IGKV3-20P01619 116 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 Q6ZUT4 128 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 GEMIN7Q9H840 131 aaKnown RBP10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 TRBV27A0A0K0K1C4 114 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 H3BUX3 64 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 XGP55808 180 aa10.43□□□□□ -0.74
VPS9D1-202ENST00000561976 BLCAPP62952 87 aa10.42□□□□□ -0.74
VPS9D1-202ENST00000561976 TRAV2A0A0B4J234 112 aa10.42□□□□□ -0.74
VPS9D1-202ENST00000561976 A4D1N5 150 aa10.42□□□□□ -0.74
VPS9D1-202ENST00000561976 H3BUA1 57 aa10.42□□□□□ -0.74
VPS9D1-202ENST00000561976 LGALS9O00182 355 aa10.42□□□□□ -0.74
VPS9D1-202ENST00000561976 IGHG2P01859 326 aa10.42□□□□□ -0.74
VPS9D1-202ENST00000561976 ANKRD29Q8N6D5 301 aa10.42□□□□□ -0.74
VPS9D1-202ENST00000561976 TRAV12-2A0A075B6T6 113 aa10.41□□□□□ -0.74
VPS9D1-202ENST00000561976 AMELXQ99217 191 aa10.41□□□□□ -0.74
VPS9D1-202ENST00000561976 VCX2Q9H322 139 aa10.41□□□□□ -0.74
VPS9D1-202ENST00000561976 MDFICQ9P1T7 246 aa10.41□□□□□ -0.74
VPS9D1-202ENST00000561976 TRBV6-5A0A0K0K1A5 114 aa10.4□□□□□ -0.74
VPS9D1-202ENST00000561976 ZNF688P0C7X2 276 aa10.4□□□□□ -0.74
VPS9D1-202ENST00000561976 IGHV4-38-2P0DP08 117 aa10.4□□□□□ -0.74
VPS9D1-202ENST00000561976 ZFHX3Q15911 3703 aa10.4□□□□□ -0.74
VPS9D1-202ENST00000561976 SHISA2Q6UWI4 295 aa10.4□□□□□ -0.74
VPS9D1-202ENST00000561976 C9JAW5 83 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 LEPROTO15243 131 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 IGHV3-16A0A0C4DH30 117 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 M0QY20 66 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 SLC25A20O43772 301 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 Q1RN00 199 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 SBSPONQ8IVN8 264 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 DCANP1Q8TF63 244 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 ERG28Q9UKR5 140 aa10.39□□□□□ -0.75
VPS9D1-202ENST00000561976 CELSR1Q9NYQ6 3014 aa10.38□□□□□ -0.75
VPS9D1-202ENST00000561976 TMEM223A0PJW6 202 aa10.38□□□□□ -0.75
VPS9D1-202ENST00000561976 TRPT1Q86TN4 253 aaKnown RBP10.38□□□□□ -0.75
VPS9D1-202ENST00000561976 IGHV4-39P01824 125 aa10.38□□□□□ -0.75
VPS9D1-202ENST00000561976 MUSTN1Q8IVN3 82 aa10.38□□□□□ -0.75
VPS9D1-202ENST00000561976 HIVEP3Q5T1R4 2406 aa10.38□□□□□ -0.75
VPS9D1-202ENST00000561976 UCNP55089 124 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 RHOHQ15669 191 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 NSUN5P1Q3KNT7 163 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 Q8N1Y9 231 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 C9orf85Q96MD7 179 aa10.37□□□□□ -0.75
VPS9D1-202ENST00000561976 A0A0J9YXV3 536 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms