RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 BPESC1Q9GZL8 116 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 TMEM101Q96IK0 257 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 WIPF1O43516 503 aa8.6□□□□□ -1.03
CUX1-218ENST00000560541 ATP5LO75964 103 aa8.6□□□□□ -1.03
CUX1-218ENST00000560541 TRBV12-3P01733 135 aa8.6□□□□□ -1.03
CUX1-218ENST00000560541 TCL1BO95988 128 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 HLA-DRB4P13762 266 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 RPL11P62913 178 aaKnown RBP8.59□□□□□ -1.03
CUX1-218ENST00000560541 HERVK_113P63121 156 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 UNQ9165/PRO28630Q6UXU0 137 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 OR10J6PQ8NGY7 276 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 HLA-DRB4X5D2U9 266 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 HRCT1Q6UXD1 115 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 BRD3OSQ6XYD6 125 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 RPL39LQ96EH5 51 aaKnown RBP8.59□□□□□ -1.03
CUX1-218ENST00000560541 ABCA2Q9BZC7 2435 aa8.59□□□□□ -1.03
CUX1-218ENST00000560541 F6UB75 175 aa8.59□□□□□ -1.04
CUX1-218ENST00000560541 CRYBG3Q68DQ2 2970 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 CELSR2Q9HCU4 2923 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 IGHV3-11P01762 117 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 C9orf47Q6ZRZ4 202 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 C14orf178Q8N769 122 aaPredicted RBP8.58□□□□□ -1.04
CUX1-218ENST00000560541 C5orf56Q8N8D9 126 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 PIFOQ8TCI5 191 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 DUX5Q96PT3 197 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 TRBV7-1A0A0A6YYK4 115 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 J3KT08 172 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 CD7P09564 240 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 S100A4P26447 101 aaKnown RBP8.58□□□□□ -1.04
CUX1-218ENST00000560541 OR13C6PQ8NH95 151 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 NTN5Q8WTR8 489 aaPredicted RBP8.58□□□□□ -1.04
CUX1-218ENST00000560541 MDFICQ9P1T7 246 aa8.58□□□□□ -1.04
CUX1-218ENST00000560541 MGPP08493 103 aa8.57□□□□□ -1.04
CUX1-218ENST00000560541 KLRB1Q12918 225 aa8.57□□□□□ -1.04
CUX1-218ENST00000560541 C4orf26Q17RF5 130 aa8.57□□□□□ -1.04
CUX1-218ENST00000560541 CSPG4Q6UVK1 2322 aa8.57□□□□□ -1.04
CUX1-218ENST00000560541 PRADC1Q9BSG0 188 aa8.57□□□□□ -1.04
CUX1-218ENST00000560541 SMIM2Q9BVW6 85 aa8.57□□□□□ -1.04
CUX1-218ENST00000560541 TRAV41A0A0B4J266 112 aa8.57□□□□□ -1.04
CUX1-218ENST00000560541 CRIP2P52943 208 aaPredicted RBP8.57□□□□□ -1.04
CUX1-218ENST00000560541 LMO4P61968 165 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 LY6EQ16553 131 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 ODF3Q96PU9 254 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 TRAV2A0A0B4J234 112 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 MYMXA0A1B0GTQ4 84 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 H7C2G1 150 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 SCGB3A1Q96QR1 104 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 PHLDA3Q9Y5J5 127 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 U3KQE9 123 aa8.56□□□□□ -1.04
CUX1-218ENST00000560541 TRAV8-4A0A0B4J246 113 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 RNASE4P34096 147 aaKnown RBP8.55□□□□□ -1.04
CUX1-218ENST00000560541 ZNF56Q15929 161 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 GPHB5Q86YW7 130 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 CSMD2Q7Z408 3487 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 ITPR1Q14643 2758 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 GNRH2O43555 120 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 SUMO2P61956 95 aaKnown RBP8.55□□□□□ -1.04
CUX1-218ENST00000560541 ZFAND2AQ8N6M9 145 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 CREBBPQ92793 2442 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 TRBV7-3A0A075B6L6 115 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 FAM236AA0A1B0GUQ0 79 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 FAM236BA0A1B0GV22 79 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 SLC25A20O43772 301 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 NDUFA7O95182 113 aa8.55□□□□□ -1.04
CUX1-218ENST00000560541 MRPL53Q96EL3 112 aaKnown RBP8.55□□□□□ -1.04
CUX1-218ENST00000560541 C9orf139Q6ZV77 190 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 TRPT1Q86TN4 253 aaKnown RBP8.54□□□□□ -1.04
CUX1-218ENST00000560541 Q8N1Y9 231 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 ITLN2Q8WWU7 325 aaPredicted RBP8.54□□□□□ -1.04
CUX1-218ENST00000560541 IGHV4-4A0A075B6R2 117 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 F8VRH5 84 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 EDN2P20800 178 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 PLNP26678 52 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 ASIPP42127 132 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 CEMP1Q6PRD7 247 aaPredicted RBP8.54□□□□□ -1.04
CUX1-218ENST00000560541 SORL1Q92673 2214 aa8.54□□□□□ -1.04
CUX1-218ENST00000560541 TEX49A0A1B0GTD5 131 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 H7C1H1 209 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 DOPEY2Q9Y3R5 2298 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 DUSP14O95147 198 aaKnown RBP8.53□□□□□ -1.04
CUX1-218ENST00000560541 LY6DQ14210 128 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 PSMG4Q5JS54 123 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 LINC00477Q96M19 166 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 MOB4Q9Y3A3 225 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 TRAV21A0A0B4J279 112 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 C2orf66Q6UXQ4 117 aa8.53□□□□□ -1.04
CUX1-218ENST00000560541 MUC4Q99102 2169 aa8.52□□□□□ -1.05
CUX1-218ENST00000560541 DPH3P1Q9H4G8 78 aa8.52□□□□□ -1.05
CUX1-218ENST00000560541 KLK9Q2XQG4 91 aa8.52□□□□□ -1.05
CUX1-218ENST00000560541 ORMDL2Q53FV1 153 aa8.52□□□□□ -1.05
CUX1-218ENST00000560541 Q6Q795 121 aa8.52□□□□□ -1.05
CUX1-218ENST00000560541 KLK9Q9UKQ9 250 aa8.52□□□□□ -1.05
CUX1-218ENST00000560541 PMVKQ15126 192 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 TAL2Q16559 108 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 Q6ZS46 218 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 LRRC75A-AS1Q8N1F1 130 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 BAALCQ8WXS3 180 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 TOMM6Q96B49 74 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 JPT2Q9H910 190 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 CUBNO60494 3623 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms