RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 F2Z2F3 143 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 CACNG7P62955 275 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 FAM74A4Q5TZK3 123 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 ZFP2Q6ZN57 461 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 C15orf53Q8NAA6 179 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 H3BNG1 76 aa15.16■□□□□ 0.02
SNX1-210ENST00000560260 PAX4O43316 350 aa15.16■□□□□ 0.02
SNX1-210ENST00000560260 PNRC1Q12796 327 aaPredicted RBP15.16■□□□□ 0.02
SNX1-210ENST00000560260 PGLYRP4Q96LB8 373 aa15.16■□□□□ 0.02
SNX1-210ENST00000560260 LOC100131303A0A0U1RQF7 123 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 CIDEAO60543 219 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 NUDT3O95989 172 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 FOXA3P55318 350 aaPredicted RBP15.15■□□□□ 0.02
SNX1-210ENST00000560260 SLAQ13239 276 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 SLC25A29Q8N8R3 303 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 SEC11CQ9BY50 192 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 GFRA4Q9GZZ7 299 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 KIF25-AS1Q9Y6Z4 181 aa15.15■□□□□ 0.02
SNX1-210ENST00000560260 A0A096LPF7 62 aa15.14■□□□□ 0.01
SNX1-210ENST00000560260 HIGD1CA8MV81 97 aa15.14■□□□□ 0.01
SNX1-210ENST00000560260 RHODO00212 210 aa15.14■□□□□ 0.01
SNX1-210ENST00000560260 NTF3P20783 257 aa15.14■□□□□ 0.01
SNX1-210ENST00000560260 RNF212Q495C1 297 aa15.14■□□□□ 0.01
SNX1-210ENST00000560260 C14orf178Q8N769 122 aaPredicted RBP15.14■□□□□ 0.01
SNX1-210ENST00000560260 LINC00476Q8WZB0 136 aa15.14■□□□□ 0.01
SNX1-210ENST00000560260 AP1S3Q96PC3 154 aa15.14■□□□□ 0.01
SNX1-210ENST00000560260 LINC00315P59091 139 aa15.13■□□□□ 0.01
SNX1-210ENST00000560260 C10orf91Q5T1B1 145 aa15.13■□□□□ 0.01
SNX1-210ENST00000560260 WDR73Q6P4I2 378 aa15.13■□□□□ 0.01
SNX1-210ENST00000560260 TRBV6-4A0A1B0GX49 114 aa15.12■□□□□ 0.01
SNX1-210ENST00000560260 FAM231BA6NCW3 169 aa15.12■□□□□ 0.01
SNX1-210ENST00000560260 Q9UF83 564 aa15.12■□□□□ 0.01
SNX1-210ENST00000560260 LCE6AA0A183 80 aa15.11■□□□□ 0.01
SNX1-210ENST00000560260 SMIM27A0A1W2PRY6 76 aa15.11■□□□□ 0.01
SNX1-210ENST00000560260 GYPEP15421 78 aa15.11■□□□□ 0.01
SNX1-210ENST00000560260 NUP35Q8NFH5 326 aa15.11■□□□□ 0.01
SNX1-210ENST00000560260 DNAH6Q9C0G6 4158 aa15.1■□□□□ 0.01
SNX1-210ENST00000560260 K7EQD1 137 aa15.1■□□□□ 0.01
SNX1-210ENST00000560260 EVI2AP22794 236 aa15.1■□□□□ 0.01
SNX1-210ENST00000560260 RHOHQ15669 191 aa15.1■□□□□ 0.01
SNX1-210ENST00000560260 TWIST1Q15672 202 aa15.1■□□□□ 0.01
SNX1-210ENST00000560260 CARHSP1Q9Y2V2 147 aaKnown RBP15.1■□□□□ 0.01
SNX1-210ENST00000560260 ICOSQ9Y6W8 199 aa15.1■□□□□ 0.01
SNX1-210ENST00000560260 P0DMU3 169 aa15.09■□□□□ 0.01
SNX1-210ENST00000560260 FAM231AP0DMU4 169 aa15.09■□□□□ 0.01
SNX1-210ENST00000560260 FAM231CP0DMU5 169 aa15.09■□□□□ 0.01
SNX1-210ENST00000560260 ZNF56Q15929 161 aa15.08■□□□□ 0
SNX1-210ENST00000560260 LGALS9CQ6DKI2 356 aa15.08■□□□□ 0
SNX1-210ENST00000560260 NAT8BQ9UHF3 227 aa15.08■□□□□ 0
SNX1-210ENST00000560260 PPP1R2P9O14990 202 aa15.07■□□□□ 0
SNX1-210ENST00000560260 LY6G6CO95867 125 aa15.07■□□□□ 0
SNX1-210ENST00000560260 TRGC1P0CF51 173 aa15.07■□□□□ 0
SNX1-210ENST00000560260 A0A1B0GUT8 65 aa15.06■□□□□ 0
SNX1-210ENST00000560260 MT-ND4LP03901 98 aa15.06■□□□□ 0
SNX1-210ENST00000560260 MGPP08493 103 aa15.06■□□□□ 0
SNX1-210ENST00000560260 LINC00694P0DN24 101 aa15.06■□□□□ 0
SNX1-210ENST00000560260 SLC7A5P1Q8MH63 180 aa15.06■□□□□ 0
SNX1-210ENST00000560260 PRADC1Q9BSG0 188 aa15.06■□□□□ 0
SNX1-210ENST00000560260 SMIM17P0DL12 118 aa15.05■□□□□ -0
SNX1-210ENST00000560260 RAB4BP61018 213 aa15.05■□□□□ -0
SNX1-210ENST00000560260 MRPL23Q16540 153 aaKnown RBP15.05■□□□□ -0
SNX1-210ENST00000560260 ANAPC16Q96DE5 110 aa15.05■□□□□ -0
SNX1-210ENST00000560260 DPH3P1Q9H4G8 78 aa15.05■□□□□ -0
SNX1-210ENST00000560260 KMT2AQ03164 3969 aa15.04■□□□□ -0
SNX1-210ENST00000560260 SRIP30626 198 aa15.04■□□□□ -0
SNX1-210ENST00000560260 ESRGQ1W209 222 aa15.04■□□□□ -0
SNX1-210ENST00000560260 BORCS7Q96B45 105 aa15.04■□□□□ -0
SNX1-210ENST00000560260 LINC00588Q9Y4M8 146 aa15.04■□□□□ -0
SNX1-210ENST00000560260 GAGE12JA6NER3 117 aa15.03■□□□□ -0
SNX1-210ENST00000560260 GAGE1Q13065 139 aa15.03■□□□□ -0
SNX1-210ENST00000560260 GAGE4Q13068 117 aa15.03■□□□□ -0
SNX1-210ENST00000560260 GAGE5Q13069 117 aa15.03■□□□□ -0
SNX1-210ENST00000560260 GAGE13Q4V321 117 aa15.03■□□□□ -0
SNX1-210ENST00000560260 SUMO4Q6EEV6 95 aa15.03■□□□□ -0
SNX1-210ENST00000560260 F5H697 171 aa15.02■□□□□ -0
SNX1-210ENST00000560260 RIGQ13278 110 aa15.01□□□□□ -0.01
SNX1-210ENST00000560260 NEGR1Q7Z3B1 354 aa15.01□□□□□ -0.01
SNX1-210ENST00000560260 CLRN3Q8NCR9 226 aa15.01□□□□□ -0.01
SNX1-210ENST00000560260 FAM3BP58499 235 aaPredicted RBP15□□□□□ -0.01
SNX1-210ENST00000560260 MRPL54Q6P161 138 aaKnown RBP15□□□□□ -0.01
SNX1-210ENST00000560260 UBE2DNLQ8IWF7 75 aa15□□□□□ -0.01
SNX1-210ENST00000560260 NEXN-AS1Q8NBZ9 246 aa15□□□□□ -0.01
SNX1-210ENST00000560260 TRBV10-1A0A0K0K1A3 114 aa14.99□□□□□ -0.01
SNX1-210ENST00000560260 A0A1B0GXF2 115 aa14.99□□□□□ -0.01
SNX1-210ENST00000560260 C7orf77A4D0Y5 90 aa14.99□□□□□ -0.01
SNX1-210ENST00000560260 M0QY20 66 aa14.99□□□□□ -0.01
SNX1-210ENST00000560260 LYPD5Q6UWN5 251 aa14.99□□□□□ -0.01
SNX1-210ENST00000560260 APOC3P02656 99 aa14.98□□□□□ -0.01
SNX1-210ENST00000560260 CCL18P55774 89 aa14.98□□□□□ -0.01
SNX1-210ENST00000560260 CTDSP1Q9GZU7 261 aa14.98□□□□□ -0.01
SNX1-210ENST00000560260 TMEM191AQ9H0A3 160 aa14.98□□□□□ -0.01
SNX1-210ENST00000560260 TRAV26-2A0A0B4J265 109 aa14.97□□□□□ -0.01
SNX1-210ENST00000560260 SMIM15Q7Z3B0 74 aa14.97□□□□□ -0.01
SNX1-210ENST00000560260 ZNRF2Q8NHG8 242 aa14.97□□□□□ -0.01
SNX1-210ENST00000560260 RNF185Q96GF1 192 aa14.97□□□□□ -0.01
SNX1-210ENST00000560260 MRPS16Q9Y3D3 137 aaKnown RBP14.97□□□□□ -0.01
SNX1-210ENST00000560260 CAMPP49913 170 aa14.96□□□□□ -0.01
SNX1-210ENST00000560260 UBE2D3P61077 147 aa14.96□□□□□ -0.01
SNX1-210ENST00000560260 UBE2D2P62837 147 aa14.96□□□□□ -0.01
SNX1-210ENST00000560260 RHEBQ15382 184 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms