RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 KCNIP4Q6PIL6 250 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 CEMP1Q6PRD7 247 aaPredicted RBP6.54□□□□□ -1.36
LDLR-210ENST00000559340 CNFNQ9BYD5 112 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 C7orf77A4D0Y5 90 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 IGHV3-53P01767 116 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 SSTP61278 116 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 CFAP126Q5VTH2 177 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 NUP35Q8NFH5 326 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 GTSF1Q8WW33 167 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 BTF3L4Q96K17 158 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 RPS10P5Q9NQ39 176 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 PRO0255Q9UI72 69 aa6.53□□□□□ -1.36
LDLR-210ENST00000559340 TRAV9-1A0A075B6T8 112 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 MUC21A0A0G2JKD1 596 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 MUC21A0A140T8X8 626 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 H3BNG1 76 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 ATP5L2Q7Z4Y8 100 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 C15orf53Q8NAA6 179 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 ZNF479Q96JC4 524 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 PRADC1Q9BSG0 188 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 KRTAP3-3Q9BYR6 98 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 KRTAP3-2Q9BYR7 98 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 DPH3P1Q9H4G8 78 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 HHLA3Q9XRX5 114 aa6.52□□□□□ -1.37
LDLR-210ENST00000559340 TRBV6-4A0A1B0GX49 114 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 F5H697 171 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 H7C1H1 209 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 PAX4O43316 350 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 RAB4BP61018 213 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 FHL2Q14192 279 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 FAM74A4Q5TZK3 123 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 SH2D6Q7Z4S9 175 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 C14orf178Q8N769 122 aaPredicted RBP6.51□□□□□ -1.37
LDLR-210ENST00000559340 POM121L12Q8N7R1 296 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 FRZBQ92765 325 aa6.51□□□□□ -1.37
LDLR-210ENST00000559340 A0A087WWL8 130 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 IGLL5B9A064 214 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 CRYGDP07320 174 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 GATA1P15976 413 aaPredicted RBP6.5□□□□□ -1.37
LDLR-210ENST00000559340 CRYBA4P53673 196 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 RHOHQ15669 191 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 ZNF56Q15929 161 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 COX19Q49B96 90 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 ZFAND6Q6FIF0 208 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.5□□□□□ -1.37
LDLR-210ENST00000559340 TMEM191AQ9H0A3 160 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 JPT2Q9H910 190 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 RYR3Q15413 4870 aa6.5□□□□□ -1.37
LDLR-210ENST00000559340 TRAV26-1A0A087WT03 109 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 IGHV3-73A0A0B4J1V6 119 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 TRBV10-1A0A0K0K1A3 114 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 MGPP08493 103 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 HOXA5P20719 270 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 EVI2AP22794 236 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 FAM3BP58499 235 aaPredicted RBP6.49□□□□□ -1.37
LDLR-210ENST00000559340 HBBP68871 147 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 MRPL23Q16540 153 aaKnown RBP6.49□□□□□ -1.37
LDLR-210ENST00000559340 TMEM88Q6PEY1 159 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 RASL11AQ6T310 242 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 SAMD10Q9BYL1 202 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 MSRB1Q9NZV6 116 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 ICOSQ9Y6W8 199 aa6.49□□□□□ -1.37
LDLR-210ENST00000559340 K7EQD1 137 aa6.48□□□□□ -1.37
LDLR-210ENST00000559340 PPP1R17O96001 155 aa6.48□□□□□ -1.37
LDLR-210ENST00000559340 S100A1P23297 94 aa6.48□□□□□ -1.37
LDLR-210ENST00000559340 CAMPP49913 170 aa6.48□□□□□ -1.37
LDLR-210ENST00000559340 CASC10Q5T4H9 136 aa6.48□□□□□ -1.37
LDLR-210ENST00000559340 UFSP1Q6NVU6 142 aa6.48□□□□□ -1.37
LDLR-210ENST00000559340 MRPL54Q6P161 138 aaKnown RBP6.48□□□□□ -1.37
LDLR-210ENST00000559340 DNAJC30Q96LL9 226 aa6.48□□□□□ -1.37
LDLR-210ENST00000559340 A0A0J9YY99 117 aa6.47□□□□□ -1.37
LDLR-210ENST00000559340 NUDT3O95989 172 aa6.47□□□□□ -1.37
LDLR-210ENST00000559340 GYPEP15421 78 aa6.47□□□□□ -1.37
LDLR-210ENST00000559340 SRIP30626 198 aa6.47□□□□□ -1.37
LDLR-210ENST00000559340 RPL36AP83881 106 aaKnown RBP6.47□□□□□ -1.37
LDLR-210ENST00000559340 SLC25A29Q8N8R3 303 aa6.47□□□□□ -1.37
LDLR-210ENST00000559340 RPL36ALQ969Q0 106 aaKnown RBP6.47□□□□□ -1.37
LDLR-210ENST00000559340 SMCO4Q9NRQ5 59 aa6.47□□□□□ -1.37
LDLR-210ENST00000559340 KIF25-AS1Q9Y6Z4 181 aa6.47□□□□□ -1.37
LDLR-210ENST00000559340 NEGR1Q7Z3B1 354 aa6.46□□□□□ -1.38
LDLR-210ENST00000559340 GATD1Q8NB37 220 aa6.46□□□□□ -1.38
LDLR-210ENST00000559340 MRAP2Q96G30 205 aa6.46□□□□□ -1.38
LDLR-210ENST00000559340 VSIG2Q96IQ7 327 aa6.46□□□□□ -1.38
LDLR-210ENST00000559340 APLNQ9ULZ1 77 aa6.46□□□□□ -1.38
LDLR-210ENST00000559340 TNFRSF18Q9Y5U5 241 aa6.46□□□□□ -1.38
LDLR-210ENST00000559340 TRBV7-3A0A075B6L6 115 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 A0A1B0GXF2 115 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 PPBPP02775 128 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 P0DMU3 169 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 FAM231AP0DMU4 169 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 FAM231CP0DMU5 169 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 RAB4AP20338 218 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 CCL18P55774 89 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 LINC00315P59091 139 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 TMEM97Q5BJF2 176 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 FAM104BQ5XKR9 115 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 SUMO4Q6EEV6 95 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 NIT2Q9NQR4 276 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 URGCP-MRPS24S4R325 110 aa6.45□□□□□ -1.38
LDLR-210ENST00000559340 TRBV24-1A0A075B6N3 115 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms