RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 RNF152Q8N8N0 203 aa5.5□□□□□ -1.53
USP3-210ENST00000559192 RETNQ9HD89 108 aa5.5□□□□□ -1.53
USP3-210ENST00000559192 GTF3C1Q12789 2109 aa5.5□□□□□ -1.53
USP3-210ENST00000559192 MAPKAPK5-AS1Q8N8E1 139 aa5.5□□□□□ -1.53
USP3-210ENST00000559192 H3BUX3 64 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 C3orf22Q8N5N4 141 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 BPESC1Q9GZL8 116 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 SPINK13Q1W4C9 94 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 IGFL3Q6UXB1 125 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 NPBQ8NG41 125 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 C10orf105Q8TEF2 133 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 ICOSQ9Y6W8 199 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 RBAKDNA6NC62 111 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 GAS8-AS1O95177 125 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 PF4P02776 101 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 RPL39P62891 51 aaKnown RBP5.49□□□□□ -1.53
USP3-210ENST00000559192 LINC00574Q9H8X3 128 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 HCFC1P51610 2035 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 IGFL2Q6UWQ7 119 aa5.49□□□□□ -1.53
USP3-210ENST00000559192 TRBV10-2A0A0K0K1G8 114 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 I3L3M4 83 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 IGLV1-47P01700 117 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 CXCL5P42830 114 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 LINC00643Q86TS7 51 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 IGHV7-81A0A0B4J1V7 117 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 BUB3O43684 328 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 TOMM6Q96B49 74 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 A4D1N5 150 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 TRBV12-3P01733 135 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 IGHV3-38A0A0C4DH36 116 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 UBE2E1P51965 193 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 DAZ1Q9NQZ3 744 aaKnown RBP5.48□□□□□ -1.53
USP3-210ENST00000559192 U3KQK5 164 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 COL4A2P08572 1712 aa5.48□□□□□ -1.53
USP3-210ENST00000559192 MED13Q9UHV7 2174 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 IGHV3-16A0A0C4DH30 117 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 A0A1W2PRX2 142 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 RNF185Q96GF1 192 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 DYSFO75923 2080 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 CADP27708 2225 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 TRAV23DV6A0A075B6W5 121 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 UBE2E2Q96LR5 201 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 FANCD2OSQ96PS1 177 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 E9PLD3 99 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 H3BT86 120 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 NDUFA7O95182 113 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 IGLC6P0CF74 106 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 SLC25A29Q8N8R3 303 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 MSRB2Q9Y3D2 182 aa5.47□□□□□ -1.53
USP3-210ENST00000559192 IGHV4-28A0A0C4DH34 117 aa5.46□□□□□ -1.53
USP3-210ENST00000559192 HRCT1Q6UXD1 115 aa5.46□□□□□ -1.53
USP3-210ENST00000559192 A0A0C4DFX4 3053 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 ROS1P08922 2347 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 TCL1BO95988 128 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 NKAPP1Q8N9T2 125 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 TNRC6BQ9UPQ9 1833 aaKnown RBP5.46□□□□□ -1.54
USP3-210ENST00000559192 SMIM9A6NGZ8 99 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 C11orf86A6NJI1 115 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 UCNP55089 124 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 USMG5Q96IX5 58 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 PKDREJQ9NTG1 2253 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 HTTP42858 3142 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 UFSP1Q6NVU6 142 aa5.46□□□□□ -1.54
USP3-210ENST00000559192 INSL3P51460 131 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 LY6DQ14210 128 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 POLEQ07864 2286 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 INTS1Q8N201 2190 aaKnown RBP5.45□□□□□ -1.54
USP3-210ENST00000559192 CCDC179H3BU77 68 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 NDUFA4O00483 81 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 FUSP35637 526 aaKnown RBP eCLIP5.45□□□□□ -1.54
USP3-210ENST00000559192 OPRPNQ99935 248 aaPredicted RBP5.45□□□□□ -1.54
USP3-210ENST00000559192 SMAD5-AS1Q9Y6J3 95 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 TANC2Q9HCD6 1990 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 NREPQ16612 68 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 TM2D2Q9BX73 214 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 WDR87Q6ZQQ6 2873 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 H0YGX0 51 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 IGF1P05019 195 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 LRRC75A-AS1Q8N1F1 130 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 CLEC2BQ92478 149 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 Q9H8V8 135 aa5.45□□□□□ -1.54
USP3-210ENST00000559192 PTPRZ1P23471 2315 aaPredicted RBP5.44□□□□□ -1.54
USP3-210ENST00000559192 GPR179Q6PRD1 2367 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 TRAV4A0A0B4J268 109 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 LGALS9O00182 355 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 NDUFA11Q86Y39 141 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 Q8N1Y9 231 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 Q8N9W7 124 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 MRPL53Q96EL3 112 aaKnown RBP5.44□□□□□ -1.54
USP3-210ENST00000559192 TIMM17BO60830 172 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 C11orf44Q8N8P7 122 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 IGHV7-4-1A0A0J9YVY3 117 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 CENPVL3A0A0U1RRI6 287 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 ZNF561-AS1K7EIQ3 104 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 C9orf47Q6ZRZ4 202 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 DEFB105AQ8NG35 78 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 VSIG2Q96IQ7 327 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 ARFGEF3Q5TH69 2177 aa5.44□□□□□ -1.54
USP3-210ENST00000559192 MKI67P46013 3256 aaKnown RBP5.44□□□□□ -1.54
USP3-210ENST00000559192 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms