RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CARD19Q96LW7 228 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 ZFAND6Q6FIF0 208 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 NDUFA11Q86Y39 141 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 TOMM6Q96B49 74 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 SNCGO76070 127 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 SCGB1A1P11684 91 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 EDN2P20800 178 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 KLK9Q9UKQ9 250 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 MUC4Q99102 2169 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 CRYBG3Q68DQ2 2970 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 SDHAF1A6NFY7 115 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 SLC25A20O43772 301 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 PSMG4Q5JS54 123 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 LYRM7Q5U5X0 104 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 CNFNQ9BYD5 112 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 CFC1BP0CG36 223 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 CFC1P0CG37 223 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 TTC32Q5I0X7 151 aa8.59□□□□□ -1.03
LDLR-208ENST00000558518 ZNF688P0C7X2 276 aa8.59□□□□□ -1.04
LDLR-208ENST00000558518 TEN1Q86WV5 123 aa8.59□□□□□ -1.04
LDLR-208ENST00000558518 PRRC2AP48634 2157 aaKnown RBP8.58□□□□□ -1.04
LDLR-208ENST00000558518 PRO1854Q9UHT4 67 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 J3QQQ9 107 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 CEMP1Q6PRD7 247 aaPredicted RBP8.58□□□□□ -1.04
LDLR-208ENST00000558518 FAM110DQ8TAY7 271 aaPredicted RBP8.58□□□□□ -1.04
LDLR-208ENST00000558518 ERG28Q9UKR5 140 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 CCDC168Q8NDH2 2452 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 A0A0J9YY99 117 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 KNCNA6PVL3 124 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 Q6ZSV7 163 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 PIFOQ8TCI5 191 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 DUX5Q96PT3 197 aa8.58□□□□□ -1.04
LDLR-208ENST00000558518 RBAKDNA6NC62 111 aa8.57□□□□□ -1.04
LDLR-208ENST00000558518 GAGE2BQ13066 116 aa8.57□□□□□ -1.04
LDLR-208ENST00000558518 GAGE2EQ4V326 116 aa8.57□□□□□ -1.04
LDLR-208ENST00000558518 DAND5Q8N907 189 aa8.57□□□□□ -1.04
LDLR-208ENST00000558518 GAGE2DQ9UEU5 116 aa8.57□□□□□ -1.04
LDLR-208ENST00000558518 BSNQ9UPA5 3926 aa8.57□□□□□ -1.04
LDLR-208ENST00000558518 PMVKQ15126 192 aa8.57□□□□□ -1.04
LDLR-208ENST00000558518 TRAV41A0A0B4J266 112 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 TEX49A0A1B0GTD5 131 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 A8MZ25 164 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 SUMO4Q6EEV6 95 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 MUSTN1Q8IVN3 82 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 ZNF625Q96I27 306 aaPredicted RBP8.56□□□□□ -1.04
LDLR-208ENST00000558518 A0A0J9YXV3 536 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 BPESC1Q9GZL8 116 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 MYO18BQ8IUG5 2567 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 TRAV12-1A0A0B4J245 112 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 PRM2P04554 102 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 ZFAND2AQ8N6M9 145 aa8.56□□□□□ -1.04
LDLR-208ENST00000558518 C10orf126Q8N4M7 172 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 ZNRF2Q8NHG8 242 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 RHPN1-AS1Q9BWJ2 59 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 TRAV4A0A0B4J268 109 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 TRAV8-3A0A0A6YYJ7 113 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 M0R1W7 72 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 CRLF1O75462 422 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 CRYGDP07320 174 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 TMEM95Q3KNT9 176 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 TCTEX1D4Q5JR98 221 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 C9orf47Q6ZRZ4 202 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 LY6G5BQ8NDX9 201 aa8.55□□□□□ -1.04
LDLR-208ENST00000558518 ODF3BA8MYP8 253 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 ELANEP08246 267 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 ZNF876PQ49A33 203 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 ZNF48Q96MX3 618 aaPredicted RBP8.54□□□□□ -1.04
LDLR-208ENST00000558518 FN1P02751 2386 aaKnown RBP8.54□□□□□ -1.04
LDLR-208ENST00000558518 TSHBP01222 138 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 SPINK13Q1W4C9 94 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 C9orf139Q6ZV77 190 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 MDFICQ9P1T7 246 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 P0DMU3 169 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 FAM231AP0DMU4 169 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 FAM231CP0DMU5 169 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 VCX2Q9H322 139 aa8.54□□□□□ -1.04
LDLR-208ENST00000558518 RNASE3P12724 160 aaKnown RBP8.53□□□□□ -1.04
LDLR-208ENST00000558518 AJUBAQ96IF1 538 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 CSMD2Q7Z408 3487 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 UBE2D1P51668 147 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 COX8CQ7Z4L0 72 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 IGLV4-69A0A075B6H9 119 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 VCYO14598 125 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 BLCAPP62952 87 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 CLEC2BQ92478 149 aa8.53□□□□□ -1.04
LDLR-208ENST00000558518 IGHV3-30P01768 117 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 IGHV3-30-5P0DP03 117 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 SMIM20Q8N5G0 67 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 DUX3Q96PT4 197 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 TRBV7-1A0A0A6YYK4 115 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 TRAV8-4A0A0B4J246 113 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 IGHV3-38A0A0C4DH36 116 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 C2orf82Q6UX34 121 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 NAV2Q8IVL1 2488 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 CCDC179H3BU77 68 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 C15orf53Q8NAA6 179 aa8.52□□□□□ -1.05
LDLR-208ENST00000558518 NPFFO15130 113 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 CD28P10747 220 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 PSMG3-AS1Q96PY0 264 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 CENPVL3A0A0U1RRI6 287 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms