RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 FXYD5Q96DB9 178 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 IGF2BP2-AS1Q96M15 143 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 DPM3Q9P2X0 92 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 HELZ2Q9BYK8 2649 aaKnown RBP3.93□□□□□ -1.78
TMEM260-210ENST00000556422 MAST4O15021 2626 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 PGPA6NDG6 321 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 IGLL5B9A064 214 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 I3L2K1 104 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 INAFM2P0DMQ5 153 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 MYCNOSP40205 109 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 NPBQ8NG41 125 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 RNF5Q99942 180 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 HLA-DQA1P01909 254 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 VMO1Q7Z5L0 202 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 NFE4Q86UQ8 179 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 TRGV9Q99603 122 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 LY96Q9Y6Y9 160 aa3.93□□□□□ -1.78
TMEM260-210ENST00000556422 PLAC8L1A1L4L8 177 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 K7EIM0 57 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 COX7A2P2O60397 106 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 NDPQ00604 133 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 PAX8Q06710 450 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 LOXL1Q08397 574 aaPredicted RBP3.92□□□□□ -1.78
TMEM260-210ENST00000556422 ORMDL2Q53FV1 153 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 ASPHD1Q5U4P2 390 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 C10orf113Q5VZT2 155 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 Q8N6K4 173 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 PAXXQ9BUH6 204 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 LAMTOR3Q9UHA4 124 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 LRRK2Q5S007 2527 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 FRMD6-AS1P0C7T7 363 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 LINC00310P59036 64 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 EBLN2Q6P2I7 272 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 V9GYV3 84 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 TRAV12-2A0A075B6T6 113 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 SMIM26A0A096LP01 95 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 NCBP2LA6PVI3 153 aaKnown RBP3.92□□□□□ -1.78
TMEM260-210ENST00000556422 E9PLD3 99 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 M0R2P5 195 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 OVOL3O00110 214 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 IGKV1-17P01599 117 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 ATP5G1P05496 136 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 DAD1P61803 113 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 LMO4P61968 165 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 BPESC1Q9GZL8 116 aa3.92□□□□□ -1.78
TMEM260-210ENST00000556422 LYRM9A8MSI8 78 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 F8W735 103 aaPredicted RBP3.91□□□□□ -1.78
TMEM260-210ENST00000556422 HLA-DRB4P13762 266 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 EFNA4P52798 201 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 ZNF329Q86UD4 541 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 NUP35Q8NFH5 326 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 HHLA3Q9XRX5 114 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 HLA-DRB4X5D2U9 266 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 ANKRD17O75179 2603 aaKnown RBP3.91□□□□□ -1.78
TMEM260-210ENST00000556422 HECTD1Q9ULT8 2610 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 A0A0A0MQY5 61 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 TCL1BO95988 128 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 APCSP02743 223 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 SNRPD3P62318 126 aaKnown RBP3.91□□□□□ -1.78
TMEM260-210ENST00000556422 EBI3Q14213 229 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 FANCD2OSQ96PS1 177 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 MXRA5Q9NR99 2828 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 H3BT86 120 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 CRYGAP11844 174 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 LGALS3P17931 250 aaKnown RBP3.91□□□□□ -1.78
TMEM260-210ENST00000556422 PLGLAQ15195 96 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 SFTA2Q6UW10 78 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 C2orf91Q6ZV80 131 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 C7orf69Q9H7B7 122 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 IL36BQ9NZH7 164 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 POLQO75417 2590 aa3.91□□□□□ -1.78
TMEM260-210ENST00000556422 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.9□□□□□ -1.783e-6■■■■□ 24
TMEM260-210ENST00000556422 IGHV4-39P01824 125 aa3.9□□□□□ -1.78
TMEM260-210ENST00000556422 EGR2P11161 476 aaPredicted RBP3.9□□□□□ -1.78
TMEM260-210ENST00000556422 CACNG7P62955 275 aa3.9□□□□□ -1.78
TMEM260-210ENST00000556422 FXYD3Q14802 87 aa3.9□□□□□ -1.78
TMEM260-210ENST00000556422 C9orf139Q6ZV77 190 aa3.9□□□□□ -1.78
TMEM260-210ENST00000556422 SHANK2-AS3Q9BTD1 123 aa3.9□□□□□ -1.78
TMEM260-210ENST00000556422 IGLV11-55A0A075B6I3 123 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 SMKR1H3BMG3 65 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 RBM3P98179 157 aaKnown RBP3.9□□□□□ -1.79
TMEM260-210ENST00000556422 ZNF414Q96IQ9 312 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 RBM12B-AS1Q9P1G2 102 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 MOB4Q9Y3A3 225 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 USP9YO00507 2555 aaPredicted RBP3.9□□□□□ -1.79
TMEM260-210ENST00000556422 TRAV9-1A0A075B6T8 112 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 TRAV41A0A0B4J266 112 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 PEX7O00628 323 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 MINOS1Q5TGZ0 78 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 CFAP126Q5VTH2 177 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 FAM168AQ92567 244 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 MINOS1-NBL1R4GNA1 71 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 S4R3C0 116 aa3.9□□□□□ -1.79
TMEM260-210ENST00000556422 CUBNO60494 3623 aa3.89□□□□□ -1.79
TMEM260-210ENST00000556422 IGHV7-81A0A0B4J1V7 117 aa3.89□□□□□ -1.79
TMEM260-210ENST00000556422 ATOX1O00244 68 aa3.89□□□□□ -1.79
TMEM260-210ENST00000556422 FXYD2P54710 66 aa3.89□□□□□ -1.79
TMEM260-210ENST00000556422 CIRBPQ14011 172 aaKnown RBP3.89□□□□□ -1.79
TMEM260-210ENST00000556422 FAM120AOSQ5T036 256 aa3.89□□□□□ -1.79
TMEM260-210ENST00000556422 Q8N9W7 124 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms