RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 JPT2Q9H910 190 aa14.08□□□□□ -0.16
CCDC88C-210ENST00000555995 OR10J3Q5JRS4 329 aa14.07□□□□□ -0.16
CCDC88C-210ENST00000555995 LELP1Q5T871 98 aa14.07□□□□□ -0.16
CCDC88C-210ENST00000555995 SPANXN1Q5VSR9 72 aa14.07□□□□□ -0.16
CCDC88C-210ENST00000555995 ZNF575Q86XF7 245 aa14.07□□□□□ -0.16
CCDC88C-210ENST00000555995 SSBP4Q9BWG4 385 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-210ENST00000555995 SAMD10Q9BYL1 202 aa14.07□□□□□ -0.16
CCDC88C-210ENST00000555995 IGHV3-38A0A0C4DH36 116 aa14.06□□□□□ -0.16
CCDC88C-210ENST00000555995 TRBV10-1A0A0K0K1A3 114 aa14.06□□□□□ -0.16
CCDC88C-210ENST00000555995 A0A087WWC5 75 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 A0A087WWL8 130 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 TMEM250H0YL14 139 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 IGLV2-8P01709 118 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 P01737 135 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 CRYGDP07320 174 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 LINC00694P0DN24 101 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 LINC01556Q5JQF7 62 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 OR10AG1Q8NH19 301 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 LYPD6BQ8NI32 183 aa14.05□□□□□ -0.16
CCDC88C-210ENST00000555995 A0A1B0GVG6 124 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 RAB19A4D1S5 217 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 C19orf71A6NCJ1 209 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 GAGE12JA6NER3 117 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 GAGE1Q13065 139 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 GAGE4Q13068 117 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 GAGE5Q13069 117 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 GAGE13Q4V321 117 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 Q6ZSN1 163 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 OR2D3Q8NGH3 330 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 MSRB1Q9NZV6 116 aa14.04□□□□□ -0.16
CCDC88C-210ENST00000555995 RBFOX3A6NFN3 312 aa14.03□□□□□ -0.16
CCDC88C-210ENST00000555995 NKX2-5P52952 324 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-210ENST00000555995 RAB4BP61018 213 aa14.03□□□□□ -0.16
CCDC88C-210ENST00000555995 C14orf178Q8N769 122 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-210ENST00000555995 AP1S3Q96PC3 154 aa14.03□□□□□ -0.16
CCDC88C-210ENST00000555995 TRBV20OR9-2A0A075B6H5 130 aa14.02□□□□□ -0.17
CCDC88C-210ENST00000555995 NDUFS6O75380 124 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-210ENST00000555995 SMIM17P0DL12 118 aa14.02□□□□□ -0.17
CCDC88C-210ENST00000555995 RPL36AP83881 106 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-210ENST00000555995 FER1L6-AS1Q8NA97 138 aa14.02□□□□□ -0.17
CCDC88C-210ENST00000555995 RPL36ALQ969Q0 106 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-210ENST00000555995 EREGO14944 169 aa14.01□□□□□ -0.17
CCDC88C-210ENST00000555995 CACNG7P62955 275 aa14.01□□□□□ -0.17
CCDC88C-210ENST00000555995 ZNF56Q15929 161 aa14.01□□□□□ -0.17
CCDC88C-210ENST00000555995 PKD1P98161 4303 aa14.01□□□□□ -0.17
CCDC88C-210ENST00000555995 PKHD1P08F94 4074 aa14□□□□□ -0.17
CCDC88C-210ENST00000555995 F2Z2F3 143 aa14□□□□□ -0.17
CCDC88C-210ENST00000555995 IGLC6P0CF74 106 aa14□□□□□ -0.17
CCDC88C-210ENST00000555995 ERVFC1-1P60608 527 aa14□□□□□ -0.17
CCDC88C-210ENST00000555995 Q6ZRN7 208 aaPredicted RBP14□□□□□ -0.17
CCDC88C-210ENST00000555995 SREK1IP1Q8N9Q2 155 aaPredicted RBP14□□□□□ -0.17
CCDC88C-210ENST00000555995 TPPP3Q9BW30 176 aa13.99□□□□□ -0.17
CCDC88C-210ENST00000555995 TRBV7-3A0A075B6L6 115 aa13.98□□□□□ -0.17
CCDC88C-210ENST00000555995 LAGE3Q14657 143 aa13.98□□□□□ -0.17
CCDC88C-210ENST00000555995 OR10G8Q8NGN5 311 aa13.98□□□□□ -0.17
CCDC88C-210ENST00000555995 EIF5A2Q9GZV4 153 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-210ENST00000555995 TOR2AQ5JU69 321 aa13.97□□□□□ -0.17
CCDC88C-210ENST00000555995 C16orf90A8MZG2 172 aa13.96□□□□□ -0.17
CCDC88C-210ENST00000555995 F5H697 171 aa13.96□□□□□ -0.17
CCDC88C-210ENST00000555995 TRGC1P0CF51 173 aa13.96□□□□□ -0.17
CCDC88C-210ENST00000555995 FAM210AQ96ND0 272 aa13.96□□□□□ -0.17
CCDC88C-210ENST00000555995 RPP21Q9H633 154 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-210ENST00000555995 MUC21A0A0G2JKD1 596 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 MUC21A0A140T8X8 626 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 IBA57-AS1B1ANH7 110 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 H7C1H1 209 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 GZMBP10144 247 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 UBE2D3P61077 147 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 UBE2D2P62837 147 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 WDR73Q6P4I2 378 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 NUDT10Q8NFP7 164 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 NUDT11Q96G61 164 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 URGCP-MRPS24S4R325 110 aa13.95□□□□□ -0.18
CCDC88C-210ENST00000555995 SPATA12Q7Z6I5 190 aa13.94□□□□□ -0.18
CCDC88C-210ENST00000555995 OCC1Q8TAD7 63 aa13.94□□□□□ -0.18
CCDC88C-210ENST00000555995 CHCHD7Q9BUK0 85 aa13.94□□□□□ -0.18
CCDC88C-210ENST00000555995 DNAH11Q96DT5 4516 aa13.93□□□□□ -0.18
CCDC88C-210ENST00000555995 IGHV3-30P01768 117 aa13.93□□□□□ -0.18
CCDC88C-210ENST00000555995 IGHV3-33P01772 117 aa13.93□□□□□ -0.18
CCDC88C-210ENST00000555995 IGHV3-30-3P0DP02 117 aa13.93□□□□□ -0.18
CCDC88C-210ENST00000555995 IGHV3-30-5P0DP03 117 aa13.93□□□□□ -0.18
CCDC88C-210ENST00000555995 TMEM97Q5BJF2 176 aa13.93□□□□□ -0.18
CCDC88C-210ENST00000555995 KCNIP4Q6PIL6 250 aa13.93□□□□□ -0.18
CCDC88C-210ENST00000555995 K7EN84 100 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 PSCAO43653 123 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 CTRLP40313 264 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 CEBPGP53567 150 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 SSTP61278 116 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 FAM231DQ6ZW35 169 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 NEXN-AS1Q8NBZ9 246 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 SMIM7Q9BQ49 75 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 Q9UF83 564 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 KIF25-AS1Q9Y6Z4 181 aa13.92□□□□□ -0.18
CCDC88C-210ENST00000555995 PKIAP61925 76 aa13.91□□□□□ -0.18
CCDC88C-210ENST00000555995 CDPF1Q6NVV7 123 aa13.91□□□□□ -0.18
CCDC88C-210ENST00000555995 LYZL1Q6UWQ5 148 aa13.91□□□□□ -0.18
CCDC88C-210ENST00000555995 RNASE7Q9H1E1 156 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-210ENST00000555995 TRAV8-3A0A0A6YYJ7 113 aa13.9□□□□□ -0.18
CCDC88C-210ENST00000555995 MGPP08493 103 aa13.9□□□□□ -0.18
CCDC88C-210ENST00000555995 TM2D2Q9BX73 214 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms