RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 MUC21A0A0G2JKD1 596 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 MUC21A0A140T8X8 626 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 GAGE12JA6NER3 117 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 RBFOX3A6NFN3 312 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 CRYGDP07320 174 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 OR5AL1P0C617 328 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 GAGE1Q13065 139 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 GAGE4Q13068 117 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 GAGE5Q13069 117 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 GAGE13Q4V321 117 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 DAZAP1Q96EP5 407 aaKnown RBP9.34□□□□□ -0.91
SHMT2-219ENST00000555563 SSBP4Q9BWG4 385 aaPredicted RBP9.34□□□□□ -0.91
SHMT2-219ENST00000555563 Q9UF83 564 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 LY96Q9Y6Y9 160 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 RYR1P21817 5038 aa9.34□□□□□ -0.91
SHMT2-219ENST00000555563 DNAH10OSP0CZ25 163 aa9.33□□□□□ -0.92
SHMT2-219ENST00000555563 GZMBP10144 247 aa9.33□□□□□ -0.92
SHMT2-219ENST00000555563 OR2D3Q8NGH3 330 aa9.33□□□□□ -0.92
SHMT2-219ENST00000555563 ATP6V0E2Q8NHE4 81 aa9.33□□□□□ -0.92
SHMT2-219ENST00000555563 TMEM250H0YL14 139 aa9.32□□□□□ -0.92
SHMT2-219ENST00000555563 P01737 135 aa9.32□□□□□ -0.92
SHMT2-219ENST00000555563 BTF3P20290 206 aaKnown RBP9.32□□□□□ -0.92
SHMT2-219ENST00000555563 TOR2AQ5JU69 321 aa9.32□□□□□ -0.92
SHMT2-219ENST00000555563 SPANXN1Q5VSR9 72 aa9.32□□□□□ -0.92
SHMT2-219ENST00000555563 GTSF1LQ9H1H1 148 aa9.32□□□□□ -0.92
SHMT2-219ENST00000555563 IGLC6P0CF74 106 aa9.31□□□□□ -0.92
SHMT2-219ENST00000555563 RPS20P60866 119 aaKnown RBP9.31□□□□□ -0.92
SHMT2-219ENST00000555563 SSTP61278 116 aa9.31□□□□□ -0.92
SHMT2-219ENST00000555563 LELP1Q5T871 98 aa9.31□□□□□ -0.92
SHMT2-219ENST00000555563 Q6ZRN7 208 aaPredicted RBP9.31□□□□□ -0.92
SHMT2-219ENST00000555563 FER1L6-AS1Q8NA97 138 aa9.31□□□□□ -0.92
SHMT2-219ENST00000555563 TPPP3Q9BW30 176 aa9.31□□□□□ -0.92
SHMT2-219ENST00000555563 BIN3Q9NQY0 253 aa9.31□□□□□ -0.92
SHMT2-219ENST00000555563 TRAV8-6A0A0B4J262 113 aa9.3□□□□□ -0.92
SHMT2-219ENST00000555563 IGHV3-38A0A0C4DH36 116 aa9.3□□□□□ -0.92
SHMT2-219ENST00000555563 K7EN84 100 aa9.3□□□□□ -0.92
SHMT2-219ENST00000555563 EVI2AP22794 236 aa9.3□□□□□ -0.92
SHMT2-219ENST00000555563 ZNF56Q15929 161 aa9.3□□□□□ -0.92
SHMT2-219ENST00000555563 OR10J3Q5JRS4 329 aa9.3□□□□□ -0.92
SHMT2-219ENST00000555563 TNFRSF18Q9Y5U5 241 aa9.3□□□□□ -0.92
SHMT2-219ENST00000555563 FAT2Q9NYQ8 4349 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 TRAV9-2A0A087WT02 112 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 K7EP13 123 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 CEBPGP53567 150 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 LINC01556Q5JQF7 62 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 OCC1Q8TAD7 63 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 FAM210AQ96ND0 272 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 AP1S3Q96PC3 154 aa9.29□□□□□ -0.92
SHMT2-219ENST00000555563 EIF5A2Q9GZV4 153 aaKnown RBP9.29□□□□□ -0.92
SHMT2-219ENST00000555563 RNASE7Q9H1E1 156 aaKnown RBP9.29□□□□□ -0.92
SHMT2-219ENST00000555563 DNAH2Q9P225 4427 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 TRBV10-1A0A0K0K1A3 114 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 XKRY2A2RUG3 117 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 RAB4BP61018 213 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 C10orf126Q8N4M7 172 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 NUDT10Q8NFP7 164 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 NUDT11Q96G61 164 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 RPP21Q9H633 154 aaKnown RBP9.28□□□□□ -0.92
SHMT2-219ENST00000555563 MSRB1Q9NZV6 116 aa9.28□□□□□ -0.92
SHMT2-219ENST00000555563 CTRLP40313 264 aa9.27□□□□□ -0.93
SHMT2-219ENST00000555563 RPL36AP83881 106 aaKnown RBP9.27□□□□□ -0.93
SHMT2-219ENST00000555563 RPL36ALQ969Q0 106 aaKnown RBP9.27□□□□□ -0.93
SHMT2-219ENST00000555563 KIF25-AS1Q9Y6Z4 181 aa9.27□□□□□ -0.93
SHMT2-219ENST00000555563 IGHV3-30P01768 117 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 IGHV3-33P01772 117 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 SMIM17P0DL12 118 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 IGHV3-30-3P0DP02 117 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 IGHV3-30-5P0DP03 117 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 UBE2D3P61077 147 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 UBE2D2P62837 147 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 CACNG7P62955 275 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 TEX261Q6UWH6 196 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 LYZL1Q6UWQ5 148 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 NFE4Q86UQ8 179 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 Q8N3U1 123 aa9.26□□□□□ -0.93
SHMT2-219ENST00000555563 TRBV7-3A0A075B6L6 115 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 A0A087WWC5 75 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 F2Z2F3 143 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 F5H697 171 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 NDUFS6O75380 124 aaKnown RBP9.25□□□□□ -0.93
SHMT2-219ENST00000555563 MGPP08493 103 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 SRP19P09132 144 aaKnown RBP9.25□□□□□ -0.93
SHMT2-219ENST00000555563 NEXN-AS1Q8NBZ9 246 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 OR10G8Q8NGN5 311 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 SMIM7Q9BQ49 75 aa9.25□□□□□ -0.93
SHMT2-219ENST00000555563 SPATA12Q7Z6I5 190 aa9.24□□□□□ -0.93
SHMT2-219ENST00000555563 DNAH17Q9UFH2 4485 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 ZNF727A8MUV8 499 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 C16orf90A8MZG2 172 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 IBA57-AS1B1ANH7 110 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 TRGC1P0CF51 173 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 FAM231DQ6ZW35 169 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 LINC01551Q86U37 167 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 CNFNQ9BYD5 112 aa9.23□□□□□ -0.93
SHMT2-219ENST00000555563 GATCO43716 136 aaKnown RBP9.22□□□□□ -0.93
SHMT2-219ENST00000555563 NTF3P20783 257 aa9.22□□□□□ -0.93
SHMT2-219ENST00000555563 KRTAP10-2P60368 255 aa9.22□□□□□ -0.93
SHMT2-219ENST00000555563 ERVFC1-1P60608 527 aa9.22□□□□□ -0.93
SHMT2-219ENST00000555563 GTSF1Q8WW33 167 aa9.22□□□□□ -0.93
SHMT2-219ENST00000555563 Q9HAA7 133 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms