RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TRAV9-2A0A087WT02 112 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 IGLC6P0CF74 106 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 SMIM17P0DL12 118 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 FAM74A3Q4VXF1 159 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 ZNF575Q86XF7 245 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 C6orf223Q8N319 242 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 SMIM7Q9BQ49 75 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 RPP21Q9H633 154 aaKnown RBP9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 KMT2AQ03164 3969 aa9.89□□□□□ -0.83
CCDC88C-207ENST00000554051 TRAV8-6A0A0B4J262 113 aa9.88□□□□□ -0.83
CCDC88C-207ENST00000554051 RAB4BP61018 213 aa9.88□□□□□ -0.83
CCDC88C-207ENST00000554051 CT83Q5H943 113 aa9.88□□□□□ -0.83
CCDC88C-207ENST00000554051 FAM231DQ6ZW35 169 aa9.88□□□□□ -0.83
CCDC88C-207ENST00000554051 C10orf126Q8N4M7 172 aa9.88□□□□□ -0.83
CCDC88C-207ENST00000554051 A0A087WWL8 130 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 LOC100131303A0A0U1RQF7 123 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 ZNF727A8MUV8 499 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 CRYGDP07320 174 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 TRGC1P0CF51 173 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 LINC00694P0DN24 101 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 CTRLP40313 264 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 CEBPGP53567 150 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 PEA15Q15121 130 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 ZNF56Q15929 161 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 WDR73Q6P4I2 378 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 ATP6V0E2Q8NHE4 81 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 TPPP3Q9BW30 176 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 SAMD10Q9BYL1 202 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 GTSF1LQ9H1H1 148 aa9.87□□□□□ -0.83
CCDC88C-207ENST00000554051 A0A087WWC5 75 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 EVI2AP22794 236 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 RAB14P61106 215 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 RPL36AP83881 106 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 LELP1Q5T871 98 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 NUDT10Q8NFP7 164 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 OCC1Q8TAD7 63 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 RPL36ALQ969Q0 106 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 NUDT11Q96G61 164 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 JPT2Q9H910 190 aa9.86□□□□□ -0.83
CCDC88C-207ENST00000554051 PRSS29PA6NIE9 313 aa9.85□□□□□ -0.83
CCDC88C-207ENST00000554051 H7C1H1 209 aa9.85□□□□□ -0.83
CCDC88C-207ENST00000554051 K7EN84 100 aa9.85□□□□□ -0.83
CCDC88C-207ENST00000554051 RTL8CO15255 209 aa9.85□□□□□ -0.83
CCDC88C-207ENST00000554051 SRP19P09132 144 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-207ENST00000554051 DNAH10OSP0CZ25 163 aa9.85□□□□□ -0.83
CCDC88C-207ENST00000554051 CNFNQ9BYD5 112 aa9.85□□□□□ -0.83
CCDC88C-207ENST00000554051 GAGE12JA6NER3 117 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 A8MWL6 223 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 ERVFC1-1P60608 527 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 GAGE1Q13065 139 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 GAGE4Q13068 117 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 GAGE5Q13069 117 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 GAGE13Q4V321 117 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 OR10J3Q5JRS4 329 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 LINC01551Q86U37 167 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 NFE4Q86UQ8 179 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 OR10G8Q8NGN5 311 aa9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 RNASE7Q9H1E1 156 aaKnown RBP9.84□□□□□ -0.83
CCDC88C-207ENST00000554051 TRBV7-3A0A075B6L6 115 aa9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 IGHV3-38A0A0C4DH36 116 aa9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 GATCO43716 136 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 LINC01556Q5JQF7 62 aa9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 Q6ZSN1 163 aa9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 C14orf178Q8N769 122 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 C15orf54Q8N8G6 183 aa9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 BORCS7Q96B45 105 aa9.83□□□□□ -0.84
CCDC88C-207ENST00000554051 F5H697 171 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 GZMBP10144 247 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 TMEM97Q5BJF2 176 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 SMIM15Q7Z3B0 74 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 WFDC10BQ8IUB3 73 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 GFRA4Q9GZZ7 299 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 DPH3P1Q9H4G8 78 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 NAT8Q9UHE5 227 aa9.82□□□□□ -0.84
CCDC88C-207ENST00000554051 FAM231BA6NCW3 169 aa9.81□□□□□ -0.84
CCDC88C-207ENST00000554051 TMEM241Q24JQ0 296 aa9.81□□□□□ -0.84
CCDC88C-207ENST00000554051 LYZL1Q6UWQ5 148 aa9.81□□□□□ -0.84
CCDC88C-207ENST00000554051 KRTAP1-5Q9BYS1 174 aa9.81□□□□□ -0.84
CCDC88C-207ENST00000554051 OSTCQ9NRP0 149 aa9.81□□□□□ -0.84
CCDC88C-207ENST00000554051 MUC21A0A0G2JKD1 596 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 MUC21A0A140T8X8 626 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 MGPP08493 103 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 LINC00315P59091 139 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 UBE2D3P61077 147 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 PKIAP61925 76 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 UBE2D2P62837 147 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 DNAJC30Q96LL9 226 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 KIF25-AS1Q9Y6Z4 181 aa9.8□□□□□ -0.84
CCDC88C-207ENST00000554051 LAGE3Q14657 143 aa9.79□□□□□ -0.84
CCDC88C-207ENST00000554051 TWIST1Q15672 202 aa9.79□□□□□ -0.84
CCDC88C-207ENST00000554051 DAZ4Q86SG3 579 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-207ENST00000554051 TSKUQ8WUA8 353 aa9.79□□□□□ -0.84
CCDC88C-207ENST00000554051 CHCHD7Q9BUK0 85 aa9.79□□□□□ -0.84
CCDC88C-207ENST00000554051 DAZ3Q9NR90 486 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-207ENST00000554051 MSRB1Q9NZV6 116 aa9.79□□□□□ -0.84
CCDC88C-207ENST00000554051 NTF3P20783 257 aa9.78□□□□□ -0.84
CCDC88C-207ENST00000554051 FOXA3P55318 350 aaPredicted RBP9.78□□□□□ -0.84
CCDC88C-207ENST00000554051 KCNIP4Q6PIL6 250 aa9.78□□□□□ -0.84
CCDC88C-207ENST00000554051 FRZBQ92765 325 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms