RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MARVELD1Q9BSK0 173 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 C1orf43Q9BWL3 253 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 RNF213Q63HN8 5207 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 USP17L23D6RBM5 183 aa11.44□□□□□ -0.58
CLSTN3-214ENST00000542663 RHODO00212 210 aa11.44□□□□□ -0.58
CLSTN3-214ENST00000542663 PRSS1P07477 247 aa11.44□□□□□ -0.58
CLSTN3-214ENST00000542663 SAPCD1Q5SSQ6 148 aa11.44□□□□□ -0.58
CLSTN3-214ENST00000542663 DNLZQ5SXM8 178 aa11.43□□□□□ -0.58
CLSTN3-214ENST00000542663 C9orf163Q8N9P6 203 aa11.43□□□□□ -0.58
CLSTN3-214ENST00000542663 RAB24Q969Q5 203 aa11.43□□□□□ -0.58
CLSTN3-214ENST00000542663 ARL2-SNX15V9GYD0 113 aa11.43□□□□□ -0.58
CLSTN3-214ENST00000542663 A0A087WWL8 130 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 TRAV34A0A0B4J273 112 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 FABP5P3A8MUU1 101 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 PET100P0DJ07 73 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 UBE2D3P61077 147 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 UBE2D2P62837 147 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 Q6ZRU5 148 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 SFRP2Q96HF1 295 aa11.42□□□□□ -0.58
CLSTN3-214ENST00000542663 B4DEV8 164 aa11.41□□□□□ -0.58
CLSTN3-214ENST00000542663 ARMS2P0C7Q2 107 aa11.41□□□□□ -0.58
CLSTN3-214ENST00000542663 MPV17L2Q567V2 206 aa11.41□□□□□ -0.58
CLSTN3-214ENST00000542663 KCNIP4Q6PIL6 250 aa11.41□□□□□ -0.58
CLSTN3-214ENST00000542663 KRBOX1C9JBD0 128 aa11.4□□□□□ -0.58
CLSTN3-214ENST00000542663 SSNA1O43805 119 aa11.4□□□□□ -0.58
CLSTN3-214ENST00000542663 HLA-DQA1P01909 254 aa11.4□□□□□ -0.58
CLSTN3-214ENST00000542663 CRIP1P50238 77 aa11.4□□□□□ -0.58
CLSTN3-214ENST00000542663 DGAT2L7PQ6IED9 249 aa11.4□□□□□ -0.58
CLSTN3-214ENST00000542663 C15orf54Q8N8G6 183 aa11.4□□□□□ -0.58
CLSTN3-214ENST00000542663 OR11H4Q8NGC9 324 aa11.4□□□□□ -0.58
CLSTN3-214ENST00000542663 TRBV7-3A0A075B6L6 115 aa11.39□□□□□ -0.59
CLSTN3-214ENST00000542663 TRBV6-8A0A0A6YYG3 113 aa11.39□□□□□ -0.59
CLSTN3-214ENST00000542663 TRBV10-1A0A0K0K1A3 114 aa11.39□□□□□ -0.59
CLSTN3-214ENST00000542663 TMEM262E9PQX1 116 aa11.39□□□□□ -0.59
CLSTN3-214ENST00000542663 CRPP02741 224 aa11.39□□□□□ -0.59
CLSTN3-214ENST00000542663 RPL36AP83881 106 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-214ENST00000542663 RPL36ALQ969Q0 106 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-214ENST00000542663 GRIFINA4D1Z8 144 aa11.38□□□□□ -0.59
CLSTN3-214ENST00000542663 M0R036 132 aa11.38□□□□□ -0.59
CLSTN3-214ENST00000542663 KRTAP26-1Q6PEX3 210 aa11.38□□□□□ -0.59
CLSTN3-214ENST00000542663 SDIM1Q6ZPB5 146 aa11.38□□□□□ -0.59
CLSTN3-214ENST00000542663 Q86TA4 180 aa11.38□□□□□ -0.59
CLSTN3-214ENST00000542663 ZC2HC1AQ96GY0 325 aa11.38□□□□□ -0.59
CLSTN3-214ENST00000542663 TMEM167BQ9NRX6 74 aa11.38□□□□□ -0.59
CLSTN3-214ENST00000542663 PTTG1O95997 202 aa11.37□□□□□ -0.59
CLSTN3-214ENST00000542663 ANGP03950 147 aaKnown RBP11.37□□□□□ -0.59
CLSTN3-214ENST00000542663 HSD17B11Q8NBQ5 300 aa11.37□□□□□ -0.59
CLSTN3-214ENST00000542663 OR10G8Q8NGN5 311 aa11.37□□□□□ -0.59
CLSTN3-214ENST00000542663 A0A1W2PRE2 83 aa11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 M0R381 172 aa11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 CXorf1O96002 111 aa11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 CIRBPQ14011 172 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 MIAQ16674 131 aa11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 PSMG3Q9BT73 122 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 PHLDA3Q9Y5J5 127 aa11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 ALG5Q9Y673 324 aa11.36□□□□□ -0.59
CLSTN3-214ENST00000542663 SH2D1AO60880 128 aa11.35□□□□□ -0.59
CLSTN3-214ENST00000542663 ATP6V0CP27449 155 aa11.35□□□□□ -0.59
CLSTN3-214ENST00000542663 A0A0D9SG52 128 aa11.34□□□□□ -0.59
CLSTN3-214ENST00000542663 RPL19P84098 196 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-214ENST00000542663 COX8CQ7Z4L0 72 aa11.34□□□□□ -0.59
CLSTN3-214ENST00000542663 NEXN-AS1Q8NBZ9 246 aa11.34□□□□□ -0.59
CLSTN3-214ENST00000542663 PRR34Q9NV39 138 aa11.34□□□□□ -0.59
CLSTN3-214ENST00000542663 PEX7O00628 323 aa11.33□□□□□ -0.6
CLSTN3-214ENST00000542663 TPT1P13693 172 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-214ENST00000542663 ZFP82Q8N141 532 aa11.33□□□□□ -0.6
CLSTN3-214ENST00000542663 TMSB15BA0A087X1C1 80 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 IFNA7P01567 189 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 MBP02144 154 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 SERF2P84101 59 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 LINC01559Q495D7 138 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 PRR27Q6MZM9 219 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 CLPSL2Q6UWE3 100 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 NTM-AS1Q6ZSK4 140 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 CHCHD5Q9BSY4 110 aa11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 ACTR3CQ9C0K3 210 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-214ENST00000542663 UBE2G2P60604 165 aa11.31□□□□□ -0.6
CLSTN3-214ENST00000542663 RAB4BP61018 213 aa11.31□□□□□ -0.6
CLSTN3-214ENST00000542663 ODF1Q14990 250 aa11.31□□□□□ -0.6
CLSTN3-214ENST00000542663 ZNF726P1Q15940 193 aa11.31□□□□□ -0.6
CLSTN3-214ENST00000542663 ZNF674Q2M3X9 581 aa11.31□□□□□ -0.6
CLSTN3-214ENST00000542663 FAM162BQ5T6X4 162 aa11.31□□□□□ -0.6
CLSTN3-214ENST00000542663 TNFSF18Q9UNG2 199 aa11.31□□□□□ -0.6
CLSTN3-214ENST00000542663 CNBPP62633 177 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-214ENST00000542663 RBX1P62877 108 aa11.29□□□□□ -0.6
CLSTN3-214ENST00000542663 LINC00269Q8N2A0 174 aa11.29□□□□□ -0.6
CLSTN3-214ENST00000542663 CLRN3Q8NCR9 226 aa11.29□□□□□ -0.6
CLSTN3-214ENST00000542663 HIST1H2BAQ96A08 127 aa11.29□□□□□ -0.6
CLSTN3-214ENST00000542663 ZFP30Q9Y2G7 519 aa11.29□□□□□ -0.6
CLSTN3-214ENST00000542663 A0A087WYN8 130 aa11.28□□□□□ -0.6
CLSTN3-214ENST00000542663 FAM74A7A6NL05 159 aa11.28□□□□□ -0.6
CLSTN3-214ENST00000542663 CHTF8P0CG12 524 aa11.28□□□□□ -0.6
CLSTN3-214ENST00000542663 PKIAP61925 76 aa11.28□□□□□ -0.6
CLSTN3-214ENST00000542663 ZNF56Q15929 161 aa11.28□□□□□ -0.6
CLSTN3-214ENST00000542663 MED28Q9H204 178 aa11.28□□□□□ -0.6
CLSTN3-214ENST00000542663 SLPIP03973 132 aa11.27□□□□□ -0.61
CLSTN3-214ENST00000542663 OR10AG1Q8NH19 301 aa11.27□□□□□ -0.61
CLSTN3-214ENST00000542663 AQP10Q96PS8 301 aa11.27□□□□□ -0.61
CLSTN3-214ENST00000542663 VAX2Q9UIW0 290 aa11.27□□□□□ -0.61
CLSTN3-214ENST00000542663 IGLV10-54A0A075B6I4 117 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms