RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CTDSP1Q9GZU7 261 aa12.32□□□□□ -0.44
CLSTN3-210ENST00000540931 MUC4Q99102 2169 aa12.32□□□□□ -0.44
CLSTN3-210ENST00000540931 TRAV26-1A0A087WT03 109 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 A0A1B0GUT8 65 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 HIGD1CA8MV81 97 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 S100A8P05109 93 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 RHOHQ15669 191 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 C10orf91Q5T1B1 145 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 TMEM88Q6PEY1 159 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 POM121L12Q8N7R1 296 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 FRZBQ92765 325 aa12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 CARHSP1Q9Y2V2 147 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-210ENST00000540931 SMIM27A0A1W2PRY6 76 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 IGHV3-53P01767 116 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 GATA1P15976 413 aaPredicted RBP12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 HOXA5P20719 270 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 NTF3P20783 257 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 CRYBA4P53673 196 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 RAB4BP61018 213 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 RIGQ13278 110 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 TWIST1Q15672 202 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 MRPL23Q16540 153 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 IMMP2LQ96T52 175 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 ICOSQ9Y6W8 199 aa12.3□□□□□ -0.44
CLSTN3-210ENST00000540931 H7C1H1 209 aa12.29□□□□□ -0.44
CLSTN3-210ENST00000540931 P0DMU3 169 aa12.29□□□□□ -0.44
CLSTN3-210ENST00000540931 FAM231AP0DMU4 169 aa12.29□□□□□ -0.44
CLSTN3-210ENST00000540931 FAM231CP0DMU5 169 aa12.29□□□□□ -0.44
CLSTN3-210ENST00000540931 GTSF1Q8WW33 167 aa12.29□□□□□ -0.44
CLSTN3-210ENST00000540931 TMEM242Q9NWH2 141 aa12.29□□□□□ -0.44
CLSTN3-210ENST00000540931 APLNQ9ULZ1 77 aa12.29□□□□□ -0.44
CLSTN3-210ENST00000540931 LYSTQ99698 3801 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 TRBV10-1A0A0K0K1A3 114 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 CRYGDP07320 174 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 RHEBQ15382 184 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 RNF212Q495C1 297 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 FAM74A4Q5TZK3 123 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 SVBPQ8N300 66 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 PGLYRP4Q96LB8 373 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 DPH3P1Q9H4G8 78 aa12.28□□□□□ -0.44
CLSTN3-210ENST00000540931 SNAPINO95295 136 aa12.27□□□□□ -0.45
CLSTN3-210ENST00000540931 ADCYAP1P18509 176 aa12.27□□□□□ -0.45
CLSTN3-210ENST00000540931 FAM3BP58499 235 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-210ENST00000540931 UFSP1Q6NVU6 142 aa12.27□□□□□ -0.45
CLSTN3-210ENST00000540931 CSMD3Q7Z407 3707 aa12.26□□□□□ -0.45
CLSTN3-210ENST00000540931 A0A087WWC5 75 aa12.26□□□□□ -0.45
CLSTN3-210ENST00000540931 K7EQD1 137 aa12.26□□□□□ -0.45
CLSTN3-210ENST00000540931 KCNIP4Q6PIL6 250 aa12.26□□□□□ -0.45
CLSTN3-210ENST00000540931 ATP5L2Q7Z4Y8 100 aa12.26□□□□□ -0.45
CLSTN3-210ENST00000540931 NUP35Q8NFH5 326 aa12.26□□□□□ -0.45
CLSTN3-210ENST00000540931 STARD9Q9P2P6 4700 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 TRAV9-1A0A075B6T8 112 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 F5H697 171 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 NUDT3O95989 172 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 SRIP30626 198 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 CCL18P55774 89 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 ZNF56Q15929 161 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 LGALS9CQ6DKI2 356 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 C14orf178Q8N769 122 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 SLC25A29Q8N8R3 303 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 VSIG2Q96IQ7 327 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 BTF3L4Q96K17 158 aa12.25□□□□□ -0.45
CLSTN3-210ENST00000540931 A0A087WWL8 130 aa12.24□□□□□ -0.45
CLSTN3-210ENST00000540931 A0A0J9YY99 117 aa12.24□□□□□ -0.45
CLSTN3-210ENST00000540931 S100PP25815 95 aa12.24□□□□□ -0.45
CLSTN3-210ENST00000540931 NEGR1Q7Z3B1 354 aa12.24□□□□□ -0.45
CLSTN3-210ENST00000540931 MUC21A0A0G2JKD1 596 aa12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 MUC21A0A140T8X8 626 aa12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 GYPEP15421 78 aa12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 SSTP61278 116 aa12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 RPL36AP83881 106 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 RPL36ALQ969Q0 106 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 SAMD10Q9BYL1 202 aa12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 TMEM191AQ9H0A3 160 aa12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 JPT2Q9H910 190 aa12.23□□□□□ -0.45
CLSTN3-210ENST00000540931 IGHV3-73A0A0B4J1V6 119 aa12.22□□□□□ -0.45
CLSTN3-210ENST00000540931 APOC3P02656 99 aa12.22□□□□□ -0.45
CLSTN3-210ENST00000540931 EVI2AP22794 236 aa12.22□□□□□ -0.45
CLSTN3-210ENST00000540931 CLRN3Q8NCR9 226 aa12.22□□□□□ -0.45
CLSTN3-210ENST00000540931 DNAJC30Q96LL9 226 aa12.22□□□□□ -0.45
CLSTN3-210ENST00000540931 KIF25-AS1Q9Y6Z4 181 aa12.22□□□□□ -0.45
CLSTN3-210ENST00000540931 PPP1R17O96001 155 aa12.21□□□□□ -0.45
CLSTN3-210ENST00000540931 TIRAPP58753 221 aa12.21□□□□□ -0.45
CLSTN3-210ENST00000540931 HBBP68871 147 aa12.21□□□□□ -0.45
CLSTN3-210ENST00000540931 RASL11AQ6T310 242 aa12.21□□□□□ -0.45
CLSTN3-210ENST00000540931 MSRB1Q9NZV6 116 aa12.21□□□□□ -0.45
CLSTN3-210ENST00000540931 A0A096LPF7 62 aa12.2□□□□□ -0.46
CLSTN3-210ENST00000540931 UBE2DNLQ8IWF7 75 aa12.2□□□□□ -0.46
CLSTN3-210ENST00000540931 NACAE9PAV3 2078 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 TRBV7-3A0A075B6L6 115 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 C7orf77A4D0Y5 90 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 MGPP08493 103 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 COX19Q49B96 90 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 TMEM97Q5BJF2 176 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 KRTAP17-1Q9BYP8 105 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 RPS10P5Q9NQ39 176 aa12.19□□□□□ -0.46
CLSTN3-210ENST00000540931 LINC00315P59091 139 aa12.18□□□□□ -0.46
CLSTN3-210ENST00000540931 MRAP2Q96G30 205 aa12.18□□□□□ -0.46
CLSTN3-210ENST00000540931 HYDINQ4G0P3 5121 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms