RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 PRR27Q6MZM9 219 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 DERL1Q9BUN8 251 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 SAMD10Q9BYL1 202 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 VAX2Q9UIW0 290 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 DYNC1H1Q14204 4646 aaKnown RBP8.01□□□□□ -1.13
SYNE1-238ENST00000540663 A0A087WWC5 75 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 TRBV10-1A0A0K0K1A3 114 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 C16orf90A8MZG2 172 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 EREGO14944 169 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 SNAI2O43623 268 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 OR5AL1P0C617 328 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 GNG4P50150 75 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 RPL19P84098 196 aaKnown RBP8.01□□□□□ -1.13
SYNE1-238ENST00000540663 FAM74A4Q5TZK3 123 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 DAZAP1Q96EP5 407 aaKnown RBP8.01□□□□□ -1.13
SYNE1-238ENST00000540663 SSBP4Q9BWG4 385 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-238ENST00000540663 BIN3Q9NQY0 253 aa8.01□□□□□ -1.13
SYNE1-238ENST00000540663 KIAA1109Q2LD37 5005 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 A0A087WWL8 130 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 GAGE12JA6NER3 117 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 ERVFC1-1P60608 527 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 RPS20P60866 119 aaKnown RBP8□□□□□ -1.13
SYNE1-238ENST00000540663 BLOC1S1P78537 153 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 GAGE1Q13065 139 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 GAGE4Q13068 117 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 GAGE5Q13069 117 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 GAGE13Q4V321 117 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 C14orf178Q8N769 122 aaPredicted RBP8□□□□□ -1.13
SYNE1-238ENST00000540663 MED9Q9NWA0 146 aa8□□□□□ -1.13
SYNE1-238ENST00000540663 XKRY2A2RUG3 117 aa7.99□□□□□ -1.13
SYNE1-238ENST00000540663 IGLV2-8P01709 118 aa7.99□□□□□ -1.13
SYNE1-238ENST00000540663 RAB4BP61018 213 aa7.99□□□□□ -1.13
SYNE1-238ENST00000540663 SPANXN1Q5VSR9 72 aa7.99□□□□□ -1.13
SYNE1-238ENST00000540663 SPATA12Q7Z6I5 190 aa7.99□□□□□ -1.13
SYNE1-238ENST00000540663 OR10AG1Q8NH19 301 aa7.99□□□□□ -1.13
SYNE1-238ENST00000540663 RAB19A4D1S5 217 aa7.98□□□□□ -1.13
SYNE1-238ENST00000540663 C19orf71A6NCJ1 209 aa7.98□□□□□ -1.13
SYNE1-238ENST00000540663 IBA57-AS1B1ANH7 110 aa7.98□□□□□ -1.13
SYNE1-238ENST00000540663 RPL36AP83881 106 aaKnown RBP7.98□□□□□ -1.13
SYNE1-238ENST00000540663 LAGE3Q14657 143 aa7.98□□□□□ -1.13
SYNE1-238ENST00000540663 ALKAL2Q6UX46 152 aa7.98□□□□□ -1.13
SYNE1-238ENST00000540663 OR2D3Q8NGH3 330 aa7.98□□□□□ -1.13
SYNE1-238ENST00000540663 RPL36ALQ969Q0 106 aaKnown RBP7.98□□□□□ -1.13
SYNE1-238ENST00000540663 TRBV20OR9-2A0A075B6H5 130 aa7.97□□□□□ -1.13
SYNE1-238ENST00000540663 P01737 135 aa7.97□□□□□ -1.13
SYNE1-238ENST00000540663 OR10G8Q8NGN5 311 aa7.97□□□□□ -1.13
SYNE1-238ENST00000540663 LYPD6BQ8NI32 183 aa7.97□□□□□ -1.13
SYNE1-238ENST00000540663 AP1S3Q96PC3 154 aa7.97□□□□□ -1.13
SYNE1-238ENST00000540663 Q9UF83 564 aa7.97□□□□□ -1.13
SYNE1-238ENST00000540663 TNFRSF18Q9Y5U5 241 aa7.97□□□□□ -1.13
SYNE1-238ENST00000540663 TRBV7-3A0A075B6L6 115 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 F2Z2F3 143 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 TMEM250H0YL14 139 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 CDK2AP2O75956 126 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 IGLC6P0CF74 106 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 SMIM17P0DL12 118 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 ZNF56Q15929 161 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 CDPF1Q6NVV7 123 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 FER1L6-AS1Q8NA97 138 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 PGPEP1Q9NXJ5 209 aa7.96□□□□□ -1.14
SYNE1-238ENST00000540663 A0A087WTM6 91 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 RBFOX3A6NFN3 312 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 NDUFS6O75380 124 aaKnown RBP7.95□□□□□ -1.14
SYNE1-238ENST00000540663 IGHV3-30P01768 117 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 IGHV3-33P01772 117 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 IGHV3-30-3P0DP02 117 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 IGHV3-30-5P0DP03 117 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 KRTAP10-2P60368 255 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 UBE2D3P61077 147 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 UBE2D2P62837 147 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 CACNG7P62955 275 aa7.95□□□□□ -1.14
SYNE1-238ENST00000540663 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-238ENST00000540663 MUC21A0A0G2JKD1 596 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 MUC21A0A140T8X8 626 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 A0A1B0GVG6 124 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 PSCAO43653 123 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 TOR2AQ5JU69 321 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 CHCHD7Q9BUK0 85 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 TPPP3Q9BW30 176 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 TM2D2Q9BX73 214 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 KIF25-AS1Q9Y6Z4 181 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 URGCP-MRPS24S4R325 110 aa7.94□□□□□ -1.14
SYNE1-238ENST00000540663 LRP1BQ9NZR2 4599 aa7.93□□□□□ -1.14
SYNE1-238ENST00000540663 TRAV8-3A0A0A6YYJ7 113 aa7.93□□□□□ -1.14
SYNE1-238ENST00000540663 F5H697 171 aa7.93□□□□□ -1.14
SYNE1-238ENST00000540663 GZMBP10144 247 aa7.93□□□□□ -1.14
SYNE1-238ENST00000540663 NKX2-5P52952 324 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-238ENST00000540663 WDR73Q6P4I2 378 aa7.93□□□□□ -1.14
SYNE1-238ENST00000540663 NEXN-AS1Q8NBZ9 246 aa7.93□□□□□ -1.14
SYNE1-238ENST00000540663 Q9HAA7 133 aa7.93□□□□□ -1.14
SYNE1-238ENST00000540663 H7C1H1 209 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 TRGC1P0CF51 173 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 CTRLP40313 264 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 PKIAP61925 76 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 TMEM97Q5BJF2 176 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 KCNIP4Q6PIL6 250 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 NIT1Q86X76 327 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 NUDT10Q8NFP7 164 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 NUDT11Q96G61 164 aa7.92□□□□□ -1.14
SYNE1-238ENST00000540663 RPP21Q9H633 154 aaKnown RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms