RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 PIK3CD-AS1Q5SR53 167 aa10.86□□□□□ -0.67
RPAIN-206ENST00000539417 SFRP2Q96HF1 295 aa10.86□□□□□ -0.67
RPAIN-206ENST00000539417 SMIM7Q9BQ49 75 aa10.86□□□□□ -0.67
RPAIN-206ENST00000539417 A8MWV9 139 aa10.85□□□□□ -0.67
RPAIN-206ENST00000539417 SCO1O75880 301 aa10.85□□□□□ -0.67
RPAIN-206ENST00000539417 OR5AL1P0C617 328 aa10.85□□□□□ -0.67
RPAIN-206ENST00000539417 CCL18P55774 89 aa10.85□□□□□ -0.67
RPAIN-206ENST00000539417 ZFP82Q8N141 532 aa10.85□□□□□ -0.67
RPAIN-206ENST00000539417 C14orf178Q8N769 122 aaPredicted RBP10.85□□□□□ -0.67
RPAIN-206ENST00000539417 SYT8Q8NBV8 401 aa10.85□□□□□ -0.67
RPAIN-206ENST00000539417 SMDT1Q9H4I9 107 aa10.85□□□□□ -0.67
RPAIN-206ENST00000539417 ZNF727A8MUV8 499 aa10.84□□□□□ -0.67
RPAIN-206ENST00000539417 NDUFS6O75380 124 aaKnown RBP10.84□□□□□ -0.67
RPAIN-206ENST00000539417 FAM74A4Q5TZK3 123 aa10.84□□□□□ -0.67
RPAIN-206ENST00000539417 TPPP3Q9BW30 176 aa10.84□□□□□ -0.67
RPAIN-206ENST00000539417 MSRB1Q9NZV6 116 aa10.84□□□□□ -0.67
RPAIN-206ENST00000539417 MRPL23Q16540 153 aaKnown RBP10.83□□□□□ -0.68
RPAIN-206ENST00000539417 LYPD5Q6UWN5 251 aa10.83□□□□□ -0.68
RPAIN-206ENST00000539417 ZFP2Q6ZN57 461 aa10.83□□□□□ -0.68
RPAIN-206ENST00000539417 LINC01551Q86U37 167 aa10.83□□□□□ -0.68
RPAIN-206ENST00000539417 TRBV6-4A0A1B0GX49 114 aa10.82□□□□□ -0.68
RPAIN-206ENST00000539417 SNAPINO95295 136 aa10.82□□□□□ -0.68
RPAIN-206ENST00000539417 FER1L6-AS1Q8NA97 138 aa10.82□□□□□ -0.68
RPAIN-206ENST00000539417 RPP21Q9H633 154 aaKnown RBP10.82□□□□□ -0.68
RPAIN-206ENST00000539417 BIN3Q9NQY0 253 aa10.82□□□□□ -0.68
RPAIN-206ENST00000539417 ADCYAP1P18509 176 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 SRIP30626 198 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 RPS20P60866 119 aaKnown RBP10.81□□□□□ -0.68
RPAIN-206ENST00000539417 LYZL1Q6UWQ5 148 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 Q6ZR54 194 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 NEGR1Q7Z3B1 354 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 MRPS16Q9Y3D3 137 aaKnown RBP10.81□□□□□ -0.68
RPAIN-206ENST00000539417 LY96Q9Y6Y9 160 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 CIDEAO60543 219 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 RHOHQ15669 191 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 SPANXN1Q5VSR9 72 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 GTSF1Q8WW33 167 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 KRTAP1-5Q9BYS1 174 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 KIF25-AS1Q9Y6Z4 181 aa10.81□□□□□ -0.68
RPAIN-206ENST00000539417 FAM3BP58499 235 aaPredicted RBP10.8□□□□□ -0.68
RPAIN-206ENST00000539417 UPK3BQ9BT76 320 aa10.8□□□□□ -0.68
RPAIN-206ENST00000539417 Q9H8V8 135 aa10.8□□□□□ -0.68
RPAIN-206ENST00000539417 GAGE12JA6NER3 117 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 GATCO43716 136 aaKnown RBP10.79□□□□□ -0.68
RPAIN-206ENST00000539417 LINC00694P0DN24 101 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 LINC00315P59091 139 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 RPL23P62829 140 aaKnown RBP10.79□□□□□ -0.68
RPAIN-206ENST00000539417 GAGE1Q13065 139 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 GAGE4Q13068 117 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 GAGE5Q13069 117 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 GAGE13Q4V321 117 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 FAM231DQ6ZW35 169 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 PRADC1Q9BSG0 188 aa10.79□□□□□ -0.68
RPAIN-206ENST00000539417 RHODO00212 210 aa10.78□□□□□ -0.68
RPAIN-206ENST00000539417 ERVFC1-1P60608 527 aa10.78□□□□□ -0.68
RPAIN-206ENST00000539417 TMEM241Q24JQ0 296 aa10.78□□□□□ -0.68
RPAIN-206ENST00000539417 ATRAIDQ6UW56 229 aa10.78□□□□□ -0.68
RPAIN-206ENST00000539417 TMA7Q9Y2S6 64 aaKnown RBP10.78□□□□□ -0.68
RPAIN-206ENST00000539417 NBDYA0A0U1RRE5 68 aa10.77□□□□□ -0.69
RPAIN-206ENST00000539417 XKRY2A2RUG3 117 aa10.77□□□□□ -0.69
RPAIN-206ENST00000539417 CTRLP40313 264 aa10.77□□□□□ -0.69
RPAIN-206ENST00000539417 WFDC10BQ8IUB3 73 aa10.77□□□□□ -0.69
RPAIN-206ENST00000539417 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.77□□□□□ -0.69
RPAIN-206ENST00000539417 ISOC2Q96AB3 205 aa10.77□□□□□ -0.69
RPAIN-206ENST00000539417 DNAH11Q96DT5 4516 aa10.77□□□□□ -0.69
RPAIN-206ENST00000539417 PKD1P98161 4303 aa10.76□□□□□ -0.69
RPAIN-206ENST00000539417 RTL8CO15255 209 aa10.76□□□□□ -0.69
RPAIN-206ENST00000539417 NTF3P20783 257 aa10.76□□□□□ -0.69
RPAIN-206ENST00000539417 HECTD4Q9Y4D8 3996 aa10.76□□□□□ -0.69
RPAIN-206ENST00000539417 EVI2AP22794 236 aa10.75□□□□□ -0.69
RPAIN-206ENST00000539417 ADIRFQ15847 76 aa10.75□□□□□ -0.69
RPAIN-206ENST00000539417 ZNF56Q15929 161 aa10.75□□□□□ -0.69
RPAIN-206ENST00000539417 FAM74A3Q4VXF1 159 aa10.75□□□□□ -0.69
RPAIN-206ENST00000539417 CLRN3Q8NCR9 226 aa10.75□□□□□ -0.69
RPAIN-206ENST00000539417 NAT8Q9UHE5 227 aa10.75□□□□□ -0.69
RPAIN-206ENST00000539417 A0A1W2PPQ1 181 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 F2Z2F3 143 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 FOXA3P55318 350 aaPredicted RBP10.74□□□□□ -0.69
RPAIN-206ENST00000539417 CACNG7P62955 275 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 SOHLH1Q5JUK2 328 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 ATP6V0E2Q8NHE4 81 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 PGLYRP4Q96LB8 373 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 OSTCQ9NRP0 149 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 V9GYV3 84 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 RAB4BP61018 213 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 AP1S3Q96PC3 154 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 CNFNQ9BYD5 112 aa10.74□□□□□ -0.69
RPAIN-206ENST00000539417 A8MWL6 223 aa10.73□□□□□ -0.69
RPAIN-206ENST00000539417 SIVA1O15304 175 aa10.73□□□□□ -0.69
RPAIN-206ENST00000539417 MGPP08493 103 aa10.73□□□□□ -0.69
RPAIN-206ENST00000539417 CT83Q5H943 113 aa10.73□□□□□ -0.69
RPAIN-206ENST00000539417 NEXN-AS1Q8NBZ9 246 aa10.73□□□□□ -0.69
RPAIN-206ENST00000539417 BIRC6Q9NR09 4857 aa10.72□□□□□ -0.69
RPAIN-206ENST00000539417 F5H697 171 aa10.72□□□□□ -0.69
RPAIN-206ENST00000539417 TIRAPP58753 221 aa10.72□□□□□ -0.69
RPAIN-206ENST00000539417 TWIST1Q15672 202 aa10.72□□□□□ -0.69
RPAIN-206ENST00000539417 WDR73Q6P4I2 378 aa10.72□□□□□ -0.69
RPAIN-206ENST00000539417 SH2D6Q7Z4S9 175 aa10.72□□□□□ -0.69
RPAIN-206ENST00000539417 GTSF1LQ9H1H1 148 aa10.72□□□□□ -0.69
RPAIN-206ENST00000539417 SUMO4Q6EEV6 95 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms