RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 TMEM191AQ9H0A3 160 aa10.25□□□□□ -0.77
TRIM3-212ENST00000533064 RETNQ9HD89 108 aa10.25□□□□□ -0.77
TRIM3-212ENST00000533064 SCRT2Q9NQ03 307 aa10.25□□□□□ -0.77
TRIM3-212ENST00000533064 M0R2P5 195 aa10.24□□□□□ -0.77
TRIM3-212ENST00000533064 M0R381 172 aa10.24□□□□□ -0.77
TRIM3-212ENST00000533064 PDZD11Q5EBL8 140 aa10.24□□□□□ -0.77
TRIM3-212ENST00000533064 C18orf32Q8TCD1 76 aa10.24□□□□□ -0.77
TRIM3-212ENST00000533064 TM2D3Q9BRN9 247 aa10.24□□□□□ -0.77
TRIM3-212ENST00000533064 MSRB1Q9NZV6 116 aa10.24□□□□□ -0.77
TRIM3-212ENST00000533064 IGHV4-28A0A0C4DH34 117 aa10.23□□□□□ -0.77
TRIM3-212ENST00000533064 EMP1P54849 157 aa10.23□□□□□ -0.77
TRIM3-212ENST00000533064 DMRTA1Q5VZB9 504 aa10.23□□□□□ -0.77
TRIM3-212ENST00000533064 PCP4L1A6NKN8 68 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 ESDP10768 282 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 DAZ2Q13117 558 aaKnown RBP10.22□□□□□ -0.77
TRIM3-212ENST00000533064 ZNF876PQ49A33 203 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 NOP10Q9NPE3 64 aaKnown RBP10.22□□□□□ -0.77
TRIM3-212ENST00000533064 TENM3Q9P273 2699 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 SERF1AO75920 110 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 LINC00310P59036 64 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 SMIM15Q7Z3B0 74 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 AMN1Q8IY45 258 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 Q8NAQ8 132 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 IL17DQ8TAD2 202 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 HIST1H2BLQ99880 126 aa10.22□□□□□ -0.77
TRIM3-212ENST00000533064 TRGV1A0A0A0MS02 117 aa10.21□□□□□ -0.78
TRIM3-212ENST00000533064 PLAC8L1A1L4L8 177 aa10.21□□□□□ -0.78
TRIM3-212ENST00000533064 FABP4P15090 132 aa10.21□□□□□ -0.78
TRIM3-212ENST00000533064 LGALS9BQ3B8N2 356 aa10.21□□□□□ -0.78
TRIM3-212ENST00000533064 U3KQK5 164 aa10.21□□□□□ -0.78
TRIM3-212ENST00000533064 MEGF8Q7Z7M0 2845 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 DEFB4AO15263 64 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 NUPR1O60356 82 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 NXPH4O95158 308 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 MRPL51Q4U2R6 128 aaKnown RBP10.2□□□□□ -0.78
TRIM3-212ENST00000533064 PIK3CD-AS1Q5SR53 167 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 PTH2Q96A98 100 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 TMEM18Q96B42 140 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 AP1S3Q96PC3 154 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 NDUFAF3Q9BU61 184 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 MRPL16Q9NX20 251 aaKnown RBP10.2□□□□□ -0.78
TRIM3-212ENST00000533064 COL7A1Q02388 2944 aa10.2□□□□□ -0.78
TRIM3-212ENST00000533064 LYRM9A8MSI8 78 aa10.19□□□□□ -0.78
TRIM3-212ENST00000533064 RAB4AP20338 218 aa10.19□□□□□ -0.78
TRIM3-212ENST00000533064 IQCJQ1A5X6 159 aa10.19□□□□□ -0.78
TRIM3-212ENST00000533064 ORMDL3Q8N138 153 aa10.19□□□□□ -0.78
TRIM3-212ENST00000533064 RASL10AQ92737 203 aa10.19□□□□□ -0.78
TRIM3-212ENST00000533064 RNF185Q96GF1 192 aa10.19□□□□□ -0.78
TRIM3-212ENST00000533064 TEX48A0A1B0GUV7 120 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 D6R8Y8 96 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 PPBPP02775 128 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 NHLRC4P0CG21 123 aaPredicted RBP10.18□□□□□ -0.78
TRIM3-212ENST00000533064 SMIM17P0DL12 118 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 BTF3P20290 206 aaKnown RBP10.18□□□□□ -0.78
TRIM3-212ENST00000533064 EVI2AP22794 236 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 C11orf68Q9H3H3 251 aaKnown RBP10.18□□□□□ -0.78
TRIM3-212ENST00000533064 A8MWV9 139 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 FAM222AQ5U5X8 452 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 Q6ZTI0 123 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 OR10D4PQ8NGN7 298 aa10.18□□□□□ -0.78
TRIM3-212ENST00000533064 PACRGQ96M98 296 aaPredicted RBP10.18□□□□□ -0.78
TRIM3-212ENST00000533064 TRGV2A0A075B6R0 118 aa10.17□□□□□ -0.78
TRIM3-212ENST00000533064 SPART-AS1P0CW21 52 aa10.17□□□□□ -0.78
TRIM3-212ENST00000533064 CKS2P33552 79 aa10.17□□□□□ -0.78
TRIM3-212ENST00000533064 PRELID3AQ96N28 172 aa10.17□□□□□ -0.78
TRIM3-212ENST00000533064 C12orf57Q99622 126 aa10.17□□□□□ -0.78
TRIM3-212ENST00000533064 DKK2Q9UBU2 259 aa10.17□□□□□ -0.78
TRIM3-212ENST00000533064 GAGE12BA1L429 117 aa10.16□□□□□ -0.78
TRIM3-212ENST00000533064 GAGE7O76087 117 aa10.16□□□□□ -0.78
TRIM3-212ENST00000533064 GAGE12FP0CL80 117 aa10.16□□□□□ -0.78
TRIM3-212ENST00000533064 GAGE12GP0CL81 117 aa10.16□□□□□ -0.78
TRIM3-212ENST00000533064 GAGE12IP0CL82 117 aa10.16□□□□□ -0.78
TRIM3-212ENST00000533064 LAMTOR2Q9Y2Q5 125 aa10.16□□□□□ -0.78
TRIM3-212ENST00000533064 A0A0J9YWU9 116 aa10.15□□□□□ -0.78
TRIM3-212ENST00000533064 DEFB130BP0DP73 79 aa10.15□□□□□ -0.78
TRIM3-212ENST00000533064 DEFB130AP0DP74 79 aa10.15□□□□□ -0.78
TRIM3-212ENST00000533064 NIT1Q86X76 327 aa10.15□□□□□ -0.78
TRIM3-212ENST00000533064 SAMD10Q9BYL1 202 aa10.15□□□□□ -0.78
TRIM3-212ENST00000533064 DPH3P1Q9H4G8 78 aa10.15□□□□□ -0.78
TRIM3-212ENST00000533064 PRKDCP78527 4128 aaKnown RBP10.15□□□□□ -0.78
TRIM3-212ENST00000533064 DNAH9Q9NYC9 4486 aa10.15□□□□□ -0.78
TRIM3-212ENST00000533064 SMIM6P0DI80 62 aa10.15□□□□□ -0.79
TRIM3-212ENST00000533064 DAD1P61803 113 aa10.15□□□□□ -0.79
TRIM3-212ENST00000533064 FAM74A4Q5TZK3 123 aa10.15□□□□□ -0.79
TRIM3-212ENST00000533064 RNASEKQ6P5S7 137 aaKnown RBP10.15□□□□□ -0.79
TRIM3-212ENST00000533064 C14orf178Q8N769 122 aaPredicted RBP10.15□□□□□ -0.79
TRIM3-212ENST00000533064 OR4C5Q8NGB2 326 aa10.15□□□□□ -0.79
TRIM3-212ENST00000533064 CHCHD1Q96BP2 118 aaKnown RBP10.15□□□□□ -0.79
TRIM3-212ENST00000533064 JPT2Q9H910 190 aa10.15□□□□□ -0.79
TRIM3-212ENST00000533064 TRAV4A0A0B4J268 109 aa10.14□□□□□ -0.79
TRIM3-212ENST00000533064 MRAP2Q96G30 205 aa10.14□□□□□ -0.79
TRIM3-212ENST00000533064 URB1-AS1Q96HZ7 61 aa10.14□□□□□ -0.79
TRIM3-212ENST00000533064 HUWE1Q7Z6Z7 4374 aaKnown RBP10.14□□□□□ -0.79
TRIM3-212ENST00000533064 A0A087WWL8 130 aa10.13□□□□□ -0.79
TRIM3-212ENST00000533064 SMKR1H3BMG3 65 aa10.13□□□□□ -0.79
TRIM3-212ENST00000533064 RHODO00212 210 aa10.13□□□□□ -0.79
TRIM3-212ENST00000533064 RS1O15537 224 aa10.13□□□□□ -0.79
TRIM3-212ENST00000533064 HSBP1O75506 76 aa10.13□□□□□ -0.79
TRIM3-212ENST00000533064 NCR2O95944 276 aa10.13□□□□□ -0.79
TRIM3-212ENST00000533064 LINC00614P0C842 121 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms