RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 PIRTP0C851 137 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 TPT1P13693 172 aaKnown RBP1.78□□□□□ -2.12
CD44-223ENST00000526553 HIST1H1BP16401 226 aaKnown RBP1.78□□□□□ -2.12
CD44-223ENST00000526553 ZNF25P17030 456 aaPredicted RBP1.78□□□□□ -2.12
CD44-223ENST00000526553 NFYBP25208 207 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 SPINT3P49223 89 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 EMX2Q04743 252 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 SLC38A11Q08AI6 406 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 DEFB110Q30KQ9 67 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 LYRM7Q5U5X0 104 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 GRINAQ7Z429 371 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 C4orf33Q8N1A6 199 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 HIST3H2BBQ8N257 126 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 TCTEX1D1Q8N7M0 179 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 WFDC11Q8NEX6 87 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 COX14Q96I36 57 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 CCDC115Q96NT0 180 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 PRRT1Q99946 306 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 TMEM70Q9BUB7 260 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 COA4Q9NYJ1 87 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 BET1LQ9NYM9 111 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 ANK2Q01484 3957 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 CR1P17927 2039 aa1.78□□□□□ -2.13
CD44-223ENST00000526553 NCKAP5O14513 1909 aa1.78□□□□□ -2.13
CD44-223ENST00000526553 HRNRQ86YZ3 2850 aaPredicted RBP1.77□□□□□ -2.13
CD44-223ENST00000526553 USF3Q68DE3 2245 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 TRBV19A0A075B6N1 114 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 A0A087X0T9 212 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 BORCS7-ASMTA0A0B4J1R7 106 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 TCRBV3S1A0A5B6 114 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 SDCBPO00560 298 aaPredicted RBP1.77□□□□□ -2.13
CD44-223ENST00000526553 OR2T1O43869 369 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 KLF7O75840 302 aaPredicted RBP1.77□□□□□ -2.13
CD44-223ENST00000526553 GADD45GO95257 159 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 C1QCP02747 245 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 CRHP06850 196 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 HTR1AP08908 422 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 LINC00032P0C843 101 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 SMIM17P0DL12 118 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 COX6A1P12074 109 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 DEFA4P12838 97 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 G0S2P27469 103 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 LCN6P62502 163 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 SELENOWP63302 87 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 SSBP1Q04837 148 aaKnown RBP1.77□□□□□ -2.13
CD44-223ENST00000526553 KISS1Q15726 138 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 DEFB113Q30KQ7 82 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 ARHGAP11BQ3KRB8 267 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 DPPA3Q6W0C5 159 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 BPIFA4PQ86YQ2 179 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 MED12LQ86YW9 2145 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 C10orf126Q8N4M7 172 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 PLPP5Q8NEB5 264 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 OR8B3Q8NGG8 313 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 OR5A2Q8NGI9 324 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 OR10K1Q8NGX5 313 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 SLC25A40Q8TBP6 338 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 PSMF1Q92530 271 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 MALSU1Q96EH3 234 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 S100A16Q96FQ6 103 aaKnown RBP1.77□□□□□ -2.13
CD44-223ENST00000526553 MCEEQ96PE7 176 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 MRPL57Q9BQC6 102 aaKnown RBP1.77□□□□□ -2.13
CD44-223ENST00000526553 HSPB9Q9BQS6 159 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 SNRNP25Q9BV90 132 aaKnown RBP1.77□□□□□ -2.13
CD44-223ENST00000526553 PCBD2Q9H0N5 130 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 CST9LQ9H4G1 147 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 OR5AC2Q9NZP5 309 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 CRCT1Q9UGL9 99 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 ZFP30Q9Y2G7 519 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 ROS1P08922 2347 aa1.77□□□□□ -2.13
CD44-223ENST00000526553 ZANQ9Y493 2812 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 ALPK2Q86TB3 2170 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 KIAA2026Q5HYC2 2103 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 HEATR1Q9H583 2144 aaKnown RBP1.76□□□□□ -2.13
CD44-223ENST00000526553 TRAV4A0A0B4J268 109 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 LOC285095A0A1B0GVY8 99 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 F6UZH7 168 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 K7EP13 123 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 APOC4-APOC2K7ER74 178 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 CYB5BO43169 146 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 DLEU1O43261 78 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 MFSD11O43934 449 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 PROSCO94903 275 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 IFNA1P01562 189 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 APOA2P02652 100 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 APOC2P02655 101 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 IL5P05113 134 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 PIPP12273 146 aaPredicted RBP1.76□□□□□ -2.13
CD44-223ENST00000526553 GUCA1AP43080 201 aaPredicted RBP1.76□□□□□ -2.13
CD44-223ENST00000526553 DNAJB13P59910 316 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 PLGLB1Q02325 96 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 ZNF345Q14585 488 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 SCGB2B2Q4G0G5 96 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 LCA10Q71F78 164 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 AAED1Q7RTV5 226 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 COMMD6Q7Z4G1 85 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 SIGLECL1Q8N7X8 197 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 ZNF439Q8NDP4 499 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 OR8J3Q8NGG0 315 aa1.76□□□□□ -2.13
CD44-223ENST00000526553 OR2T35Q8NGX2 323 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms