RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 GAGE4Q13068 117 aa11.09□□□□□ -0.63
LSM1-205ENST00000523511 GAGE5Q13069 117 aa11.09□□□□□ -0.63
LSM1-205ENST00000523511 GAGE13Q4V321 117 aa11.09□□□□□ -0.63
LSM1-205ENST00000523511 TRBV10-1A0A0K0K1A3 114 aa11.08□□□□□ -0.64
LSM1-205ENST00000523511 SMIM17P0DL12 118 aa11.08□□□□□ -0.64
LSM1-205ENST00000523511 BCL2P10415 239 aa11.08□□□□□ -0.64
LSM1-205ENST00000523511 ERVFC1-1P60608 527 aa11.08□□□□□ -0.64
LSM1-205ENST00000523511 LINC01556Q5JQF7 62 aa11.08□□□□□ -0.64
LSM1-205ENST00000523511 JPT2Q9H910 190 aa11.08□□□□□ -0.64
LSM1-205ENST00000523511 HECTD4Q9Y4D8 3996 aa11.08□□□□□ -0.64
LSM1-205ENST00000523511 A0A087WWL8 130 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 OR5AL1P0C617 328 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 RPL36AP83881 106 aaKnown RBP11.07□□□□□ -0.64
LSM1-205ENST00000523511 CENPWQ5EE01 88 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 UFSP1Q6NVU6 142 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 SPATA12Q7Z6I5 190 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 C9orf62Q8N4C0 152 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 RPL36ALQ969Q0 106 aaKnown RBP11.07□□□□□ -0.64
LSM1-205ENST00000523511 SAMD10Q9BYL1 202 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 PGPEP1Q9NXJ5 209 aa11.07□□□□□ -0.64
LSM1-205ENST00000523511 RAB4BP61018 213 aa11.06□□□□□ -0.64
LSM1-205ENST00000523511 Q6ZSN1 163 aa11.06□□□□□ -0.64
LSM1-205ENST00000523511 SSBP4Q9BWG4 385 aaPredicted RBP11.06□□□□□ -0.64
LSM1-205ENST00000523511 SNAI2O43623 268 aa11.05□□□□□ -0.64
LSM1-205ENST00000523511 PSCAO43653 123 aa11.05□□□□□ -0.64
LSM1-205ENST00000523511 RPL19P84098 196 aaKnown RBP11.05□□□□□ -0.64
LSM1-205ENST00000523511 KCNIP4Q6PIL6 250 aa11.05□□□□□ -0.64
LSM1-205ENST00000523511 ZNF575Q86XF7 245 aa11.05□□□□□ -0.64
LSM1-205ENST00000523511 DERL1Q9BUN8 251 aa11.05□□□□□ -0.64
LSM1-205ENST00000523511 URGCP-MRPS24S4R325 110 aa11.05□□□□□ -0.64
LSM1-205ENST00000523511 DNAH17Q9UFH2 4485 aa11.05□□□□□ -0.64
LSM1-205ENST00000523511 IBA57-AS1B1ANH7 110 aa11.04□□□□□ -0.64
LSM1-205ENST00000523511 F2Z2F3 143 aa11.04□□□□□ -0.64
LSM1-205ENST00000523511 P01737 135 aa11.04□□□□□ -0.64
LSM1-205ENST00000523511 TOR2AQ5JU69 321 aa11.04□□□□□ -0.64
LSM1-205ENST00000523511 C14orf178Q8N769 122 aaPredicted RBP11.04□□□□□ -0.64
LSM1-205ENST00000523511 OR2D3Q8NGH3 330 aa11.04□□□□□ -0.64
LSM1-205ENST00000523511 FAT2Q9NYQ8 4349 aa11.04□□□□□ -0.64
LSM1-205ENST00000523511 TRBV7-3A0A075B6L6 115 aa11.03□□□□□ -0.64
LSM1-205ENST00000523511 RAB19A4D1S5 217 aa11.03□□□□□ -0.64
LSM1-205ENST00000523511 F5H697 171 aa11.03□□□□□ -0.64
LSM1-205ENST00000523511 ZNF56Q15929 161 aa11.03□□□□□ -0.64
LSM1-205ENST00000523511 Q6ZRN7 208 aaPredicted RBP11.03□□□□□ -0.64
LSM1-205ENST00000523511 TM2D2Q9BX73 214 aa11.03□□□□□ -0.64
LSM1-205ENST00000523511 CACNG7P62955 275 aa11.02□□□□□ -0.65
LSM1-205ENST00000523511 ALKAL2Q6UX46 152 aa11.02□□□□□ -0.65
LSM1-205ENST00000523511 FER1L6-AS1Q8NA97 138 aa11.02□□□□□ -0.65
LSM1-205ENST00000523511 OR10AG1Q8NH19 301 aa11.02□□□□□ -0.65
LSM1-205ENST00000523511 AP1S3Q96PC3 154 aa11.02□□□□□ -0.65
LSM1-205ENST00000523511 TPPP3Q9BW30 176 aa11.02□□□□□ -0.65
LSM1-205ENST00000523511 TNFRSF18Q9Y5U5 241 aa11.02□□□□□ -0.65
LSM1-205ENST00000523511 RBFOX3A6NFN3 312 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 IGHV3-30P01768 117 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 IGHV3-33P01772 117 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 IGHV3-30-3P0DP02 117 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 IGHV3-30-5P0DP03 117 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 SSTP61278 116 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 LAGE3Q14657 143 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 CDPF1Q6NVV7 123 aa11.01□□□□□ -0.65
LSM1-205ENST00000523511 TRAV8-3A0A0A6YYJ7 113 aa11□□□□□ -0.65
LSM1-205ENST00000523511 C19orf71A6NCJ1 209 aa11□□□□□ -0.65
LSM1-205ENST00000523511 LINC00694P0DN24 101 aa11□□□□□ -0.65
LSM1-205ENST00000523511 ELOBQ15370 118 aa11□□□□□ -0.65
LSM1-205ENST00000523511 TMEM97Q5BJF2 176 aa11□□□□□ -0.65
LSM1-205ENST00000523511 A0A087WX48 190 aa10.99□□□□□ -0.65
LSM1-205ENST00000523511 TMEM250H0YL14 139 aa10.99□□□□□ -0.65
LSM1-205ENST00000523511 H7C1H1 209 aa10.99□□□□□ -0.65
LSM1-205ENST00000523511 CDK2AP2O75956 126 aa10.99□□□□□ -0.65
LSM1-205ENST00000523511 IGLV2-8P01709 118 aa10.99□□□□□ -0.65
LSM1-205ENST00000523511 OR10G8Q8NGN5 311 aa10.99□□□□□ -0.65
LSM1-205ENST00000523511 COX11Q9Y6N1 276 aa10.99□□□□□ -0.65
LSM1-205ENST00000523511 A0A087WTM6 91 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 MUC21A0A0G2JKD1 596 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 MUC21A0A140T8X8 626 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 TRGC1P0CF51 173 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 PKIAP61925 76 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 RMI2Q96E14 147 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 CHCHD7Q9BUK0 85 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 EIF5A2Q9GZV4 153 aaKnown RBP10.98□□□□□ -0.65
LSM1-205ENST00000523511 Q9HAA7 133 aa10.98□□□□□ -0.65
LSM1-205ENST00000523511 UBE2D3P61077 147 aa10.97□□□□□ -0.65
LSM1-205ENST00000523511 UBE2D2P62837 147 aa10.97□□□□□ -0.65
LSM1-205ENST00000523511 WDR73Q6P4I2 378 aa10.97□□□□□ -0.65
LSM1-205ENST00000523511 LYPD6BQ8NI32 183 aa10.97□□□□□ -0.65
LSM1-205ENST00000523511 PKD1P98161 4303 aa10.97□□□□□ -0.65
LSM1-205ENST00000523511 IGLC6P0CF74 106 aa10.96□□□□□ -0.65
LSM1-205ENST00000523511 GZMBP10144 247 aa10.96□□□□□ -0.65
LSM1-205ENST00000523511 DAZ4Q86SG3 579 aaKnown RBP10.96□□□□□ -0.65
LSM1-205ENST00000523511 NUDT10Q8NFP7 164 aa10.96□□□□□ -0.65
LSM1-205ENST00000523511 NUDT11Q96G61 164 aa10.96□□□□□ -0.65
LSM1-205ENST00000523511 DNAJC30Q96LL9 226 aa10.96□□□□□ -0.65
LSM1-205ENST00000523511 DAZ3Q9NR90 486 aaKnown RBP10.96□□□□□ -0.65
LSM1-205ENST00000523511 Q9UF83 564 aa10.96□□□□□ -0.65
LSM1-205ENST00000523511 TRBV20OR9-2A0A075B6H5 130 aa10.95□□□□□ -0.66
LSM1-205ENST00000523511 TMEM262E9PQX1 116 aa10.95□□□□□ -0.66
LSM1-205ENST00000523511 NDUFS6O75380 124 aaKnown RBP10.95□□□□□ -0.66
LSM1-205ENST00000523511 KRTAP10-2P60368 255 aa10.95□□□□□ -0.66
LSM1-205ENST00000523511 SMIM15Q7Z3B0 74 aa10.95□□□□□ -0.66
LSM1-205ENST00000523511 OCC1Q8TAD7 63 aa10.95□□□□□ -0.66
LSM1-205ENST00000523511 RPP21Q9H633 154 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms