RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 HBG2P69892 147 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 CCL20P78556 96 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 PDE6HQ13956 83 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 NDUFA5Q16718 116 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 ZNF876PQ49A33 203 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 C14orf177Q52M58 125 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 GCSAMLQ5JQS6 135 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 LINC01600Q96MT4 127 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 KRTAP4-11Q9BYQ6 195 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 MED9Q9NWA0 146 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 TRBV7-9A0A0J9YWB2 115 aa7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 NBEAP1P0C6P0 100 aa7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 NIT1Q86X76 327 aa7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 PSMG3Q9BT73 122 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 SLC25A2Q9BXI2 301 aa7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 NPCDR1Q9BY65 106 aa7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 OR51M1Q9H341 326 aa7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 Q9UF83 564 aa7.09□□□□□ -1.27
LIMCH1-221ENST00000515785 C9JQL5 133 aa7.08□□□□□ -1.28
LIMCH1-221ENST00000515785 CSN1S1P47710 185 aa7.08□□□□□ -1.28
LIMCH1-221ENST00000515785 RAB14P61106 215 aa7.08□□□□□ -1.28
LIMCH1-221ENST00000515785 FAM213BQ8TBF2 198 aa7.08□□□□□ -1.28
LIMCH1-221ENST00000515785 SCGB1C1Q8TD33 95 aa7.08□□□□□ -1.28
LIMCH1-221ENST00000515785 ZC2HC1AQ96GY0 325 aa7.08□□□□□ -1.28
LIMCH1-221ENST00000515785 LPAP08519 4548 aa7.08□□□□□ -1.28
LIMCH1-221ENST00000515785 A0A1B0GV50 99 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 USP17L23D6RBM5 183 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 PRSS1P07477 247 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 RPL29P47914 159 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 RANP62826 216 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 MIR17HGQ75NE6 70 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 CYB561D1Q8N8Q1 229 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 C9orf163Q8N9P6 203 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 SAMD10Q9BYL1 202 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 SDF2L1Q9HCN8 221 aa7.07□□□□□ -1.28
LIMCH1-221ENST00000515785 PGPEP1LA6NFU8 196 aa7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 F6UZH7 168 aa7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 HMGB3O15347 200 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 CIDEAO60543 219 aa7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 EIF5AL1Q6IS14 154 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 SDIM1Q6ZPB5 146 aa7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 MBD3L1Q8WWY6 194 aa7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 FAM167A-AS1Q96KT0 104 aa7.06□□□□□ -1.28
LIMCH1-221ENST00000515785 A0A087WWC5 75 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 A0A087WX48 190 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 TRAV21A0A0B4J279 112 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 RBAKDNA6NC62 111 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 DIRC3C9JPN6 131 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 HLA-DQA1P01909 254 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 MGST1P10620 155 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 FGF8P55075 233 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 KRTAP10-8P60410 259 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 BLOC1S1P78537 153 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 SERF2P84101 59 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 AKR1C8PQ5T2L2 129 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 DGAT2L7PQ6IED9 249 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 FXYD5Q96DB9 178 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 C1orf43Q9BWL3 253 aa7.05□□□□□ -1.28
LIMCH1-221ENST00000515785 A0A0J9YXV3 536 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 UMAD1C9J7I0 102 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 PHOX2AO14813 284 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 ADCYAP1P18509 176 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 RAB5CP51148 216 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 ELOBQ15370 118 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 ZNF506Q5JVG8 444 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 KCNIP4Q6PIL6 250 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 ATRAIDQ6UW56 229 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 OR10G9Q8NGN4 311 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 OR10G7Q8NGN6 311 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 KCNS1Q96KK3 526 aa7.04□□□□□ -1.28
LIMCH1-221ENST00000515785 TRAV1-1A0A0B4J248 108 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 RAB19A4D1S5 217 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 PGPA6NDG6 321 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 TMEM262E9PQX1 116 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 CHTF8P0CG12 524 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 LINC00694P0DN24 101 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 Q0VG73 95 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 ENHOQ6UWT2 76 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 C14orf178Q8N769 122 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 RAB24Q969Q5 203 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 LENEPQ9Y5L5 61 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 KIF25-AS1Q9Y6Z4 181 aa7.03□□□□□ -1.28
LIMCH1-221ENST00000515785 A0A087WYN8 130 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 C17orf112F2Z3M2 114 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 C15orf54Q8N8G6 183 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 SFT2D1Q8WV19 159 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 TVP23CQ96ET8 276 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 FAM210AQ96ND0 272 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 TREM1Q9NP99 234 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 C11orf21Q9P2W6 132 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 FAT4Q6V0I7 4981 aa7.02□□□□□ -1.29
LIMCH1-221ENST00000515785 CTXND1A0A1B0GTU2 59 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 MAP1LC3B2A6NCE7 125 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 S100A1P23297 94 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 WDR73Q6P4I2 378 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 GTSF1Q8WW33 167 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 MAP1LC3BQ9GZQ8 125 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 PARLQ9H300 379 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 JPT2Q9H910 190 aa7.01□□□□□ -1.29
LIMCH1-221ENST00000515785 TMEM218A2RU14 115 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms