RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 RHOHQ15669 191 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 ZNF56Q15929 161 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 RNF212Q495C1 297 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 ZFP2Q6ZN57 461 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 FAM231DQ6ZW35 169 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 SLC25A29Q8N8R3 303 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 SSBP4Q9BWG4 385 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 PLECQ15149 4684 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 DYNC2H1Q8NCM8 4307 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 ALMS1Q8TCU4 4167 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 A8MWL6 223 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 F2Z2F3 143 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 F5H697 171 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 K7EQD1 137 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 IGLC6P0CF74 106 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 RPL23P62829 140 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 NEGR1Q7Z3B1 354 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 C14orf178Q8N769 122 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 AP1S3Q96PC3 154 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 LINC00588Q9Y4M8 146 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 IGLV2-18A0A075B6J9 118 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 TRBV6-4A0A1B0GX49 114 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 NXPH4O95158 308 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 MGPP08493 103 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 TWIST1Q15672 202 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 ESRGQ1W209 222 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 Q6ZSN1 163 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 ISOC2Q96AB3 205 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 BORCS7Q96B45 105 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 PGLYRP4Q96LB8 373 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 OSTCQ9NRP0 149 aa7.93□□□□□ -1.14
LIMCH1-210ENST00000509454 KMT2CQ8NEZ4 4911 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 GAGE12JA6NER3 117 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 M0R2N4 97 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 CRYGDP07320 174 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 GAGE1Q13065 139 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 GAGE4Q13068 117 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 GAGE5Q13069 117 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 GAGE13Q4V321 117 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 COMMD7Q86VX2 200 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 OR10G8Q8NGN5 311 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 MSRB1Q9NZV6 116 aa7.92□□□□□ -1.14
LIMCH1-210ENST00000509454 TRGC1P0CF51 173 aa7.91□□□□□ -1.14
LIMCH1-210ENST00000509454 CTRLP40313 264 aa7.91□□□□□ -1.14
LIMCH1-210ENST00000509454 FAM3BP58499 235 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-210ENST00000509454 CT83Q5H943 113 aa7.91□□□□□ -1.14
LIMCH1-210ENST00000509454 UFSP1Q6NVU6 142 aa7.91□□□□□ -1.14
LIMCH1-210ENST00000509454 SH2D6Q7Z4S9 175 aa7.91□□□□□ -1.14
LIMCH1-210ENST00000509454 NTF3P20783 257 aa7.9□□□□□ -1.14
LIMCH1-210ENST00000509454 SMIM15Q7Z3B0 74 aa7.9□□□□□ -1.14
LIMCH1-210ENST00000509454 TSKUQ8WUA8 353 aa7.9□□□□□ -1.14
LIMCH1-210ENST00000509454 GTSF1Q8WW33 167 aa7.9□□□□□ -1.14
LIMCH1-210ENST00000509454 LORP23490 312 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-210ENST00000509454 RAB4BP61018 213 aa7.89□□□□□ -1.15
LIMCH1-210ENST00000509454 UQCC3Q6UW78 93 aa7.89□□□□□ -1.15
LIMCH1-210ENST00000509454 LYPD5Q6UWN5 251 aa7.89□□□□□ -1.15
LIMCH1-210ENST00000509454 MRPS16Q9Y3D3 137 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-210ENST00000509454 V9GYV3 84 aa7.89□□□□□ -1.15
LIMCH1-210ENST00000509454 HIGD1CA8MV81 97 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 EVI2AP22794 236 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 WDR73Q6P4I2 378 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 ATP6V0E2Q8NHE4 81 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 ZNRF2Q8NHG8 242 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 F8W036 122 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 RPL36AP83881 106 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 RPL36ALQ969Q0 106 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 GFRA4Q9GZZ7 299 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 DPH3P1Q9H4G8 78 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 Q9H8V8 135 aa7.88□□□□□ -1.15
LIMCH1-210ENST00000509454 A0A1B0GUT8 65 aa7.87□□□□□ -1.15
LIMCH1-210ENST00000509454 OR10J3Q5JRS4 329 aa7.87□□□□□ -1.15
LIMCH1-210ENST00000509454 Q9UF83 564 aa7.87□□□□□ -1.15
LIMCH1-210ENST00000509454 NAT8BQ9UHF3 227 aa7.87□□□□□ -1.15
LIMCH1-210ENST00000509454 RYR2Q92736 4967 aa7.87□□□□□ -1.15
LIMCH1-210ENST00000509454 LYSTQ99698 3801 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 TRBV10-1A0A0K0K1A3 114 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 H7C1H1 209 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 SIVA1O15304 175 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 PNRC1Q12796 327 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 SUMO4Q6EEV6 95 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 CNFNQ9BYD5 112 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 GTSF1LQ9H1H1 148 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 KIF25-AS1Q9Y6Z4 181 aa7.86□□□□□ -1.15
LIMCH1-210ENST00000509454 DNAH1Q9P2D7 4330 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 SACSQ9NZJ4 4579 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 TRAV8-6A0A0B4J262 113 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 TMEM218A2RU14 115 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 FAM231BA6NCW3 169 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 PPP1R2P9O14990 202 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 MT-ND4LP03901 98 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 RIGQ13278 110 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 NUP35Q8NFH5 326 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 UPK3BQ9BT76 320 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 TNFRSF18Q9Y5U5 241 aa7.85□□□□□ -1.15
LIMCH1-210ENST00000509454 TRBV7-3A0A075B6L6 115 aa7.84□□□□□ -1.15
LIMCH1-210ENST00000509454 NBDYA0A0U1RRE5 68 aa7.84□□□□□ -1.15
LIMCH1-210ENST00000509454 LINC00862A6NCI5 91 aa7.84□□□□□ -1.15
LIMCH1-210ENST00000509454 FOXA3P55318 350 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-210ENST00000509454 NEXN-AS1Q8NBZ9 246 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms