RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MIC13Q5XKP0 118 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 CTAGE3PQ8IX95 158 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 C20orf197Q8N268 126 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 COX7B2Q8TF08 81 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 CACNA1HO95180 2353 aa0.23□□□□□ -2.37
HMGB1P28-201ENST00000507778 ABCA4P78363 2273 aa0.22□□□□□ -2.37
HMGB1P28-201ENST00000507778 M0R2Z0 102 aa0.22□□□□□ -2.37
HMGB1P28-201ENST00000507778 NCR2O95944 276 aa0.22□□□□□ -2.37
HMGB1P28-201ENST00000507778 SPANXN1Q5VSR9 72 aa0.22□□□□□ -2.37
HMGB1P28-201ENST00000507778 SLC48A1Q6P1K1 146 aa0.22□□□□□ -2.37
HMGB1P28-201ENST00000507778 SMIM11BQ8TCY0 68 aa0.22□□□□□ -2.37
HMGB1P28-201ENST00000507778 TPRP12270 2363 aaKnown RBP0.21□□□□□ -2.38
HMGB1P28-201ENST00000507778 PRG4Q92954 1404 aaPredicted RBP0.21□□□□□ -2.38
HMGB1P28-201ENST00000507778 DSTQ03001 7570 aaKnown RBP0.21□□□□□ -2.38
HMGB1P28-201ENST00000507778 LINC00694P0DN24 101 aa0.21□□□□□ -2.38
HMGB1P28-201ENST00000507778 TMEM242Q9NWH2 141 aa0.21□□□□□ -2.38
HMGB1P28-201ENST00000507778 MAP2P11137 1827 aaKnown RBP0.21□□□□□ -2.38
HMGB1P28-201ENST00000507778 CASZ1Q86V15 1759 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 TRBV7-1A0A0A6YYK4 115 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 APODP05090 189 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 PIRTP0C851 137 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 ALX1Q15699 326 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 COPZ2Q9P299 210 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 V9GYV3 84 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 ZNF142P52746 1687 aaPredicted RBP0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 TANC1Q9C0D5 1861 aa0.2□□□□□ -2.38
HMGB1P28-201ENST00000507778 LAMC3Q9Y6N6 1575 aa0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 PTPRZ1P23471 2315 aaPredicted RBP0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 TTC28Q96AY4 2481 aa0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 K7ERU9 68 aa0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 MAFIPQ8WZ33 124 aa0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 PSMG3Q9BT73 122 aaPredicted RBP0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 MED13LQ71F56 2210 aa0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 JMJD1CQ15652 2540 aa0.19□□□□□ -2.38
HMGB1P28-201ENST00000507778 COX6A2Q02221 97 aa0.18□□□□□ -2.38
HMGB1P28-201ENST00000507778 RPL7L1Q6DKI1 246 aaKnown RBP0.18□□□□□ -2.38
HMGB1P28-201ENST00000507778 Q6ZUT4 128 aa0.18□□□□□ -2.38
HMGB1P28-201ENST00000507778 TSTD1Q8NFU3 115 aa0.18□□□□□ -2.38
HMGB1P28-201ENST00000507778 Q96NJ1 140 aa0.18□□□□□ -2.38
HMGB1P28-201ENST00000507778 UNC13BO14795 1591 aa0.18□□□□□ -2.38
HMGB1P28-201ENST00000507778 PLXNA2O75051 1894 aa0.18□□□□□ -2.38
HMGB1P28-201ENST00000507778 FHAD1B1AJZ9 1412 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 SPINK1P00995 79 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 NMBP08949 121 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 ACYP2P14621 99 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 SMIM21Q3B7S5 101 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 Q5BKY6 102 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 C9orf116Q5BN46 136 aaPredicted RBP0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 RPRMQ9NS64 109 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 MAST4O15021 2626 aa0.17□□□□□ -2.38
HMGB1P28-201ENST00000507778 TNS1Q9HBL0 1735 aaKnown RBP0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 LOC105371267A0A1B0GV96 52 aa0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 NPFFO15130 113 aa0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 PITX3O75364 302 aa0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 RRAS2P62070 204 aaPredicted RBP0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 C10orf82Q8WW14 230 aa0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 ANP32BQ92688 251 aaKnown RBP0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 TMEM2Q9UHN6 1383 aa0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 PIEZO1Q92508 2521 aa0.16□□□□□ -2.38
HMGB1P28-201ENST00000507778 ZFYVE26Q68DK2 2539 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 A6NIN4 97 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 IFNA17P01571 189 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 SCIMPQ6UWF3 145 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 SCP2D1Q9UJQ7 156 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 UNC13AQ9UPW8 1703 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 SSPOA2VEC9 5147 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 ADGRB1O14514 1584 aa0.15□□□□□ -2.39
HMGB1P28-201ENST00000507778 F5P12259 2224 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 MYO7AQ13402 2215 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 DAPK1P53355 1430 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 IL5P05113 134 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 PIPP12273 146 aaPredicted RBP0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 UBE2G1P62253 170 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 Q6ZRX8 168 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 TPT1P8Q9HAU6 139 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 IGF2RP11717 2491 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 SSC5DA1L4H1 1573 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 NEBP20929 6669 aa0.14□□□□□ -2.39
HMGB1P28-201ENST00000507778 ABCA12Q86UK0 2595 aa0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 VIRMAQ69YN4 1812 aaKnown RBP0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 TRGV1A0A0A0MS02 117 aa0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 TMEM14DPA8MWL7 114 aa0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 UBE2D1P51668 147 aa0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 EDDM3BP56851 147 aa0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 SPTSSAQ969W0 71 aa0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 CEP152O94986 1710 aa0.13□□□□□ -2.39
HMGB1P28-201ENST00000507778 IBTKQ9P2D0 1353 aaPredicted RBP0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 GCHFRP30047 84 aa0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 GUCA1AP43080 201 aaPredicted RBP0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 COPZ1P61923 177 aa0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 RPS25P62851 125 aaKnown RBP0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 INSL4Q14641 139 aa0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 SMCO1Q147U7 214 aa0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 FAM213BQ8TBF2 198 aa0.12□□□□□ -2.39
HMGB1P28-201ENST00000507778 LRP1Q07954 4544 aaKnown RBP0.11□□□□□ -2.39
HMGB1P28-201ENST00000507778 TCEAL4Q96EI5 215 aa0.11□□□□□ -2.39
HMGB1P28-201ENST00000507778 SNCGO76070 127 aa0.1□□□□□ -2.39
HMGB1P28-201ENST00000507778 NDUFB6O95139 128 aa0.1□□□□□ -2.39
HMGB1P28-201ENST00000507778 CBLN1P23435 193 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms