RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 TRGC1P0CF51 173 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 HOXA5P20719 270 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 TMEM88Q6PEY1 159 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 POM121L12Q8N7R1 296 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 GTSF1Q8WW33 167 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 AP1S3Q96PC3 154 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 PRO0255Q9UI72 69 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 COL7A1Q02388 2944 aa5.79□□□□□ -1.48
LIMCH1-206ENST00000505705 RHODO00212 210 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 MGPP08493 103 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 FOXA3P55318 350 aaPredicted RBP5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 RIGQ13278 110 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 FHL2Q14192 279 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 ZNF56Q15929 161 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 WDR73Q6P4I2 378 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 C14orf178Q8N769 122 aaPredicted RBP5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 FAM210BQ96KR6 192 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 PRADC1Q9BSG0 188 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 SAMD10Q9BYL1 202 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 RPS10P5Q9NQ39 176 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 MSRB1Q9NZV6 116 aa5.78□□□□□ -1.48
LIMCH1-206ENST00000505705 A0A1B0GUT8 65 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 SMIM27A0A1W2PRY6 76 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 SNAPINO95295 136 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 CTRLP40313 264 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 CRYBA4P53673 196 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 TCTAP57738 103 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 FAM3BP58499 235 aaPredicted RBP5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 C10orf91Q5T1B1 145 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 KCNIP4Q6PIL6 250 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 ZFP2Q6ZN57 461 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 SVBPQ8N300 66 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 C15orf53Q8NAA6 179 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 CLRN3Q8NCR9 226 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 NUP35Q8NFH5 326 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 CTDSP1Q9GZU7 261 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 DPH3P1Q9H4G8 78 aa5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 CARHSP1Q9Y2V2 147 aaKnown RBP5.77□□□□□ -1.49
LIMCH1-206ENST00000505705 TENM3Q9P273 2699 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 K7EQD1 137 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 NXPH4O95158 308 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 CRYGDP07320 174 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 GATA1P15976 413 aaPredicted RBP5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 EVI2AP22794 236 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 S100PP25815 95 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 RHOHQ15669 191 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 SLC25A29Q8N8R3 303 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 ICOSQ9Y6W8 199 aa5.76□□□□□ -1.49
LIMCH1-206ENST00000505705 MUC4Q99102 2169 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 A0A096LPF7 62 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 TRBV6-4A0A1B0GX49 114 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 C7orf77A4D0Y5 90 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 H3BNG1 76 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 GYPEP15421 78 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 SRIP30626 198 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 CAMPP49913 170 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 RAB4BP61018 213 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 RHEBQ15382 184 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 MRPL23Q16540 153 aaKnown RBP5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 UFSP1Q6NVU6 142 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 MRPL54Q6P161 138 aaKnown RBP5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 UBE2DNLQ8IWF7 75 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 CNFNQ9BYD5 112 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 APLNQ9ULZ1 77 aa5.75□□□□□ -1.49
LIMCH1-206ENST00000505705 TGP01266 2768 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 LOC100131303A0A0U1RQF7 123 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 A0A1B0GW15 77 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 GAGE12JA6NER3 117 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 H7C1H1 209 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 S100A8P05109 93 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 HBBP68871 147 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 GAGE1Q13065 139 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 GAGE4Q13068 117 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 GAGE5Q13069 117 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 GAGE13Q4V321 117 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 VSIG2Q96IQ7 327 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 IMMP2LQ96T52 175 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 URGCP-MRPS24S4R325 110 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 DNAH7Q8WXX0 4024 aa5.74□□□□□ -1.49
LIMCH1-206ENST00000505705 A0A087WWC5 75 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 LY6G6CO95867 125 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 P0DMU3 169 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 FAM231AP0DMU4 169 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 FAM231CP0DMU5 169 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 CCL18P55774 89 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 RPL36AP83881 106 aaKnown RBP5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 Q6ZSN1 163 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 NEGR1Q7Z3B1 354 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 SH2D6Q7Z4S9 175 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 ZNRF2Q8NHG8 242 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 RPL36ALQ969Q0 106 aaKnown RBP5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 BTF3L4Q96K17 158 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 TMEM191AQ9H0A3 160 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 TMEM242Q9NWH2 141 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 TNFRSF18Q9Y5U5 241 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 KIF25-AS1Q9Y6Z4 181 aa5.73□□□□□ -1.49
LIMCH1-206ENST00000505705 TRBV10-1A0A0K0K1A3 114 aa5.72□□□□□ -1.49
LIMCH1-206ENST00000505705 SUMO4Q6EEV6 95 aa5.72□□□□□ -1.49
LIMCH1-206ENST00000505705 ATP5L2Q7Z4Y8 100 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms