RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 GATD1Q8NB37 220 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 C11orf68Q9H3H3 251 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 BPTFQ12830 3046 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 DEFB1P60022 68 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 TNCP24821 2201 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 ABCA1O95477 2261 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 E9PLD3 99 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 J3QKU1 62 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 SPINK8P0C7L1 97 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 GTSF1LQ9H1H1 148 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 H3BMG7 143 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE2BQ13066 116 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE2EQ4V326 116 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 APRG1Q8IVJ8 170 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 PPDPFLQ8WWR9 84 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE2DQ9UEU5 116 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 PRB1P04280 392 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 FGF6P10767 208 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 ZFAND6Q6FIF0 208 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 PRSS47A8MTI9 375 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 IGLL5B9A064 214 aa8.18□□□□□ -1.1
LIMCH1-205ENST00000503057 C20orf173Q96LM9 149 aa8.17□□□□□ -1.1
LIMCH1-205ENST00000503057 TRAV8-3A0A0A6YYJ7 113 aa8.17□□□□□ -1.1
LIMCH1-205ENST00000503057 TRAV25A0A0B4J276 109 aa8.17□□□□□ -1.1
LIMCH1-205ENST00000503057 ETDBQ3ZM63 59 aa8.17□□□□□ -1.1
LIMCH1-205ENST00000503057 RAI1Q7Z5J4 1906 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-205ENST00000503057 ANKHD1Q8IWZ3 2542 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-205ENST00000503057 LGALS9O00182 355 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 FXYD2P54710 66 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 RNASE13Q5GAN3 156 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 S100A7L2Q5SY68 101 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 ZNF625Q96I27 306 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 IGKV2-29A2NJV5 120 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 C11orf86A6NJI1 115 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 RPL39P62891 51 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 RNF185Q96GF1 192 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 H3BMM0 161 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 UBE2WQ96B02 151 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 NOP10Q9NPE3 64 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 VWC2LB2RUY7 222 aa8.16□□□□□ -1.1
LIMCH1-205ENST00000503057 C16orf74Q96GX8 76 aa8.15□□□□□ -1.1
LIMCH1-205ENST00000503057 APOC4P55056 127 aa8.15□□□□□ -1.1
LIMCH1-205ENST00000503057 LINC00310P59036 64 aa8.15□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE6Q13070 117 aa8.15□□□□□ -1.1
LIMCH1-205ENST00000503057 LRRC75A-AS1Q8N1F1 130 aa8.15□□□□□ -1.1
LIMCH1-205ENST00000503057 K7EQD1 137 aa8.15□□□□□ -1.11
LIMCH1-205ENST00000503057 MRPS12O15235 138 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-205ENST00000503057 CDSNQ15517 529 aa8.15□□□□□ -1.11
LIMCH1-205ENST00000503057 TTTY13Q9BZ97 58 aa8.15□□□□□ -1.11
LIMCH1-205ENST00000503057 MDFICQ9P1T7 246 aa8.15□□□□□ -1.11
LIMCH1-205ENST00000503057 MUC6Q6W4X9 2439 aa8.15□□□□□ -1.11
LIMCH1-205ENST00000503057 CACNA1BQ00975 2339 aa8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 CFC1BP0CG36 223 aa8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 CFC1P0CG37 223 aa8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 AMTNQ6UX39 209 aa8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 DAZ2Q13117 558 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 Q6YL49 198 aa8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 DAZ4Q86SG3 579 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 DAZ3Q9NR90 486 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 DAD1P61803 113 aa8.14□□□□□ -1.11
LIMCH1-205ENST00000503057 ZFAND2AQ8N6M9 145 aa8.13□□□□□ -1.11
LIMCH1-205ENST00000503057 A0A0J9YXV3 536 aa8.13□□□□□ -1.11
LIMCH1-205ENST00000503057 DSCAMO60469 2012 aa8.13□□□□□ -1.11
LIMCH1-205ENST00000503057 K7EQG2 157 aa8.13□□□□□ -1.11
LIMCH1-205ENST00000503057 JPT2Q9H910 190 aa8.13□□□□□ -1.11
LIMCH1-205ENST00000503057 PCSK5Q92824 1860 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 HERV-K104P63124 156 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 C20orf203Q8NBC4 194 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 TANC2Q9HCD6 1990 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 CLPSL1A2RUU4 121 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 TRAV13-2A0A0B4J235 113 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 IFITM1P13164 125 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 NEXN-AS1Q8NBZ9 246 aa8.12□□□□□ -1.11
LIMCH1-205ENST00000503057 ARFGEF3Q5TH69 2177 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 GAGE12HA6NDE8 117 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 IGHV4-31P0DP07 118 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 CNFNQ9BYD5 112 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 PIFOQ8TCI5 191 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 TMEM61Q8N0U2 210 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 MAP6D1Q9H9H5 199 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 SLC25A29Q8N8R3 303 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 Q9H8V8 135 aa8.11□□□□□ -1.11
LIMCH1-205ENST00000503057 CEP350Q5VT06 3117 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 TRBV7-3A0A075B6L6 115 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 MRGPRG-AS1Q2M3A8 158 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 IGHV4-4A0A075B6R2 117 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 F5H768 121 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 PSMB8P28062 276 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 MUSTN1Q8IVN3 82 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 Q8N976 141 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 MED13LQ71F56 2210 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 INAFM2P0DMQ5 153 aa8.1□□□□□ -1.11
LIMCH1-205ENST00000503057 IGLV1-40P01703 118 aa8.09□□□□□ -1.11
LIMCH1-205ENST00000503057 PFN2P35080 140 aa8.09□□□□□ -1.11
LIMCH1-205ENST00000503057 A4D1N5 150 aa8.09□□□□□ -1.11
LIMCH1-205ENST00000503057 RNASE8Q8TDE3 154 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-205ENST00000503057 WDR87Q6ZQQ6 2873 aa8.09□□□□□ -1.11
LIMCH1-205ENST00000503057 NRACQ8N912 160 aa8.09□□□□□ -1.11
LIMCH1-205ENST00000503057 COX8CQ7Z4L0 72 aa8.09□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms