RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	RHOD	O00212	210 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	IGHV3-30	P01768	117 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	IGHV3-33	P01772	117 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	IGHV3-30-3	P0DP02	117 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	IGHV3-30-5	P0DP03	117 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	AKR1C3	P42330	323 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	CCL20	P78556	96 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	TMUB2	Q71RG4	321 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	MLST8	Q9BVC4	326 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755		A0A1B0GV50	99 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	SCO2	A0A1W2PP80	73 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755		M0R381	172 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	H2AFB1	P0C5Y9	115 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	TPT1	P13693	172 aa	Known RBP	4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	XG	P55808	180 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	KRTAP10-1	P60331	282 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	EIF5A	P63241	154 aa	Known RBP	4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	LAGE3	Q14657	143 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	BAGE2	Q86Y30	109 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755		Q8N3U1	123 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755	PHLDA3	Q9Y5J5	127 aa		4.82	□□□□□ -1.64
VPS52-221	ENST00000495755		A0A087WWC5	75 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755		A0A087WWL8	130 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	TRAV1-1	A0A0B4J248	108 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	PFDN1	O60925	122 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	CXCL1	P09341	107 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	GCSH	P23434	173 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	FAM74A4	Q5TZK3	123 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	ZFP82	Q8N141	532 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	SSBP4	Q9BWG4	385 aa	Predicted RBP	4.81	□□□□□ -1.64
VPS52-221	ENST00000495755		Q9HAA7	133 aa		4.81	□□□□□ -1.64
VPS52-221	ENST00000495755	TRBV10-1	A0A0K0K1A3	114 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	SNAI2	O43623	268 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	PSCA	O43653	123 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	RPL35	P42766	123 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	RAB5C	P51148	216 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	RPL19	P84098	196 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	DAZ4	Q86SG3	579 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-221	ENST00000495755		Q8N814	137 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	OR10AG1	Q8NH19	301 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	NTN5	Q8WTR8	489 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	C11orf52	Q96A22	123 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	DAZ3	Q9NR90	486 aa	Known RBP	4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	GNG13	Q9P2W3	67 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	MYCBP2	O75592	4640 aa		4.8	□□□□□ -1.64
VPS52-221	ENST00000495755	IGLV5-52	A0A0A0MRZ9	124 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	TRAV8-3	A0A0A6YYJ7	113 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	OR5AL1	P0C617	328 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	RAB4B	P61018	213 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	UBE2D3	P61077	147 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	UBE2D2	P62837	147 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	RPL36A	P83881	106 aa	Known RBP	4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	TOR2A	Q5JU69	321 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	EIF5AL1	Q6IS14	154 aa	Known RBP	4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	PRR27	Q6MZM9	219 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	NIT1	Q86X76	327 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	TCTE3	Q8IZS6	198 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	OR10G8	Q8NGN5	311 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	RPL36AL	Q969Q0	106 aa	Known RBP	4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	DERL1	Q9BUN8	251 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	TM2D2	Q9BX73	214 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	MANBAL	Q9NQG1	85 aa		4.79	□□□□□ -1.64
VPS52-221	ENST00000495755	TRBV7-3	A0A075B6L6	115 aa		4.78	□□□□□ -1.64
VPS52-221	ENST00000495755	EPM2A	B3EWF7	344 aa		4.78	□□□□□ -1.64
VPS52-221	ENST00000495755	IGLV2-8	P01709	118 aa		4.78	□□□□□ -1.64
VPS52-221	ENST00000495755	SULT1A2	P50226	295 aa		4.78	□□□□□ -1.64
VPS52-221	ENST00000495755	WFDC2	Q14508	124 aa		4.78	□□□□□ -1.64
VPS52-221	ENST00000495755	KIF25-AS1	Q9Y6Z4	181 aa		4.78	□□□□□ -1.64
VPS52-221	ENST00000495755	MUC21	A0A0G2JKD1	596 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	MUC21	A0A140T8X8	626 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	RAB19	A4D1S5	217 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	C19orf71	A6NCJ1	209 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	TEX46	H3BTG2	121 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	C1QB	P02746	253 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	MEF2B	Q02080	365 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	CENPW	Q5EE01	88 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	SPANXN1	Q5VSR9	72 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755		Q6ZNX1	250 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	SLC51B	Q86UW2	128 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	NEXN-AS1	Q8NBZ9	246 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	DNAJC30	Q96LL9	226 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	TMEM70	Q9BUB7	260 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	CHCHD7	Q9BUK0	85 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	COX11	Q9Y6N1	276 aa		4.77	□□□□□ -1.65
VPS52-221	ENST00000495755	TRBV20OR9-2	A0A075B6H5	130 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755		A0A087WX48	190 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	TRBV6-8	A0A0A6YYG3	113 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	PDE6D	O43924	150 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	IGLC6	P0CF74	106 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	GZMB	P10144	247 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	GNG4	P50150	75 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	RPS20	P60866	119 aa	Known RBP	4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	ELOB	Q15370	118 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	ZNF56	Q15929	161 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	ATRAID	Q6UW56	229 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	BAALC	Q8WXS3	180 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	SMIM12	Q96EX1	92 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	KLK12	Q9UKR0	248 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	URGCP-MRPS24	S4R325	110 aa		4.76	□□□□□ -1.65
VPS52-221	ENST00000495755	RBFOX3	A6NFN3	312 aa		4.75	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms