RNA–Protein interactions for RNA: ENST00000495630.1

TMEM53-209, Transcript of transmembrane protein 53, human

TSL 2

Gene TMEM53, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM53-209	ENST00000495630	OR11H4	Q8NGC9	324 aa		11.33	□□□□□ -0.6
TMEM53-209	ENST00000495630	S100Z	Q8WXG8	99 aa		11.33	□□□□□ -0.6
TMEM53-209	ENST00000495630	SFRP2	Q96HF1	295 aa		11.33	□□□□□ -0.6
TMEM53-209	ENST00000495630	TRAV34	A0A0B4J273	112 aa		11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630		H3BVH4	76 aa		11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	SSNA1	O43805	119 aa		11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	MB	P02144	154 aa		11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	RPL36A	P83881	106 aa	Known RBP	11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	FAM74A4	Q5TZK3	123 aa		11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	RPL36AL	Q969Q0	106 aa	Known RBP	11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	MARVELD1	Q9BSK0	173 aa		11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	ARL2-SNX15	V9GYD0	113 aa		11.32	□□□□□ -0.6
TMEM53-209	ENST00000495630	TRBV7-3	A0A075B6L6	115 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630		A0A1W2PRE2	83 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630	KRBOX1	C9JBD0	128 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630	MT1HL1	P0DM35	61 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630	UBE2D3	P61077	147 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630	UBE2D2	P62837	147 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630	SERF2	P84101	59 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630		Q6ZRU5	148 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630	C9orf163	Q8N9P6	203 aa		11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630	PSMG3	Q9BT73	122 aa	Predicted RBP	11.31	□□□□□ -0.6
TMEM53-209	ENST00000495630		A0A087WWL8	130 aa		11.3	□□□□□ -0.6
TMEM53-209	ENST00000495630	TRBV6-8	A0A0A6YYG3	113 aa		11.3	□□□□□ -0.6
TMEM53-209	ENST00000495630	USP17L23	D6RBM5	183 aa		11.3	□□□□□ -0.6
TMEM53-209	ENST00000495630	UPK1B	O75841	260 aa		11.3	□□□□□ -0.6
TMEM53-209	ENST00000495630	ACTR3C	Q9C0K3	210 aa	Predicted RBP	11.3	□□□□□ -0.6
TMEM53-209	ENST00000495630	PHLDA3	Q9Y5J5	127 aa		11.3	□□□□□ -0.6
TMEM53-209	ENST00000495630	CRP	P02741	224 aa		11.29	□□□□□ -0.6
TMEM53-209	ENST00000495630	ATP6V0C	P27449	155 aa		11.29	□□□□□ -0.6
TMEM53-209	ENST00000495630	CRIP1	P50238	77 aa		11.29	□□□□□ -0.6
TMEM53-209	ENST00000495630	C15orf54	Q8N8G6	183 aa		11.29	□□□□□ -0.6
TMEM53-209	ENST00000495630	HSD17B11	Q8NBQ5	300 aa		11.29	□□□□□ -0.6
TMEM53-209	ENST00000495630	GRIFIN	A4D1Z8	144 aa		11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	IFNA7	P01567	189 aa		11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	PRSS1	P07477	247 aa		11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	TPT1	P13693	172 aa	Known RBP	11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	COX8C	Q7Z4L0	72 aa		11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	OR10G8	Q8NGN5	311 aa		11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	TNFSF18	Q9UNG2	199 aa		11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	ZFP30	Q9Y2G7	519 aa		11.28	□□□□□ -0.6
TMEM53-209	ENST00000495630	PKHD1L1	Q86WI1	4243 aa		11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630		A0A0D9SG52	128 aa		11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630		M0R036	132 aa		11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630	ANG	P03950	147 aa	Known RBP	11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630	PKIA	P61925	76 aa		11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630	MIA	Q16674	131 aa		11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630	SDIM1	Q6ZPB5	146 aa		11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630	ZC2HC1A	Q96GY0	325 aa		11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	11.27	□□□□□ -0.61
TMEM53-209	ENST00000495630		M0R381	172 aa		11.26	□□□□□ -0.61
TMEM53-209	ENST00000495630	RPL19	P84098	196 aa	Known RBP	11.26	□□□□□ -0.61
TMEM53-209	ENST00000495630	FAM162B	Q5T6X4	162 aa		11.26	□□□□□ -0.61
TMEM53-209	ENST00000495630	ZFP82	Q8N141	532 aa		11.26	□□□□□ -0.61
TMEM53-209	ENST00000495630	HIST1H2BA	Q96A08	127 aa		11.26	□□□□□ -0.61
TMEM53-209	ENST00000495630	NKX6-2	Q9C056	277 aa	Predicted RBP	11.26	□□□□□ -0.61
TMEM53-209	ENST00000495630	PEX7	O00628	323 aa		11.25	□□□□□ -0.61
TMEM53-209	ENST00000495630	SH2D1A	O60880	128 aa		11.25	□□□□□ -0.61
TMEM53-209	ENST00000495630	HLA-DQA1	P01909	254 aa		11.25	□□□□□ -0.61
TMEM53-209	ENST00000495630	RAB4B	P61018	213 aa		11.25	□□□□□ -0.61
TMEM53-209	ENST00000495630	IFITM3	Q01628	133 aa		11.25	□□□□□ -0.61
TMEM53-209	ENST00000495630	MPV17L2	Q567V2	206 aa		11.25	□□□□□ -0.61
TMEM53-209	ENST00000495630		Q86TA4	180 aa		11.25	□□□□□ -0.61
TMEM53-209	ENST00000495630	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.24	□□□□□ -0.61
TMEM53-209	ENST00000495630	CLRN3	Q8NCR9	226 aa		11.24	□□□□□ -0.61
TMEM53-209	ENST00000495630	PANO1	I0J062	215 aa		11.23	□□□□□ -0.61
TMEM53-209	ENST00000495630	ZNF674	Q2M3X9	581 aa		11.23	□□□□□ -0.61
TMEM53-209	ENST00000495630	LINC01559	Q495D7	138 aa		11.23	□□□□□ -0.61
TMEM53-209	ENST00000495630	CHCHD5	Q9BSY4	110 aa		11.23	□□□□□ -0.61
TMEM53-209	ENST00000495630	PRR34	Q9NV39	138 aa		11.23	□□□□□ -0.61
TMEM53-209	ENST00000495630	PTTG1	O95997	202 aa		11.22	□□□□□ -0.61
TMEM53-209	ENST00000495630	CIRBP	Q14011	172 aa	Known RBP	11.22	□□□□□ -0.61
TMEM53-209	ENST00000495630	TMEM97	Q5BJF2	176 aa		11.22	□□□□□ -0.61
TMEM53-209	ENST00000495630	PRR27	Q6MZM9	219 aa		11.22	□□□□□ -0.61
TMEM53-209	ENST00000495630	KRTAP26-1	Q6PEX3	210 aa		11.22	□□□□□ -0.61
TMEM53-209	ENST00000495630	NEXN-AS1	Q8NBZ9	246 aa		11.22	□□□□□ -0.61
TMEM53-209	ENST00000495630	AQP10	Q96PS8	301 aa		11.22	□□□□□ -0.61
TMEM53-209	ENST00000495630	TMSB15B	A0A087X1C1	80 aa		11.21	□□□□□ -0.61
TMEM53-209	ENST00000495630	UBE2G2	P60604	165 aa		11.21	□□□□□ -0.61
TMEM53-209	ENST00000495630	FAM74A7	A6NL05	159 aa		11.2	□□□□□ -0.62
TMEM53-209	ENST00000495630	FMC1	Q96HJ9	113 aa		11.2	□□□□□ -0.62
TMEM53-209	ENST00000495630	TRBV6-1	A0A0K0K1D8	114 aa		11.19	□□□□□ -0.62
TMEM53-209	ENST00000495630	CTXND1	A0A1B0GTU2	59 aa		11.19	□□□□□ -0.62
TMEM53-209	ENST00000495630	CNBP	P62633	177 aa	Known RBP	11.19	□□□□□ -0.62
TMEM53-209	ENST00000495630	ZNF726P1	Q15940	193 aa		11.19	□□□□□ -0.62
TMEM53-209	ENST00000495630	DPH3	Q96FX2	82 aa		11.19	□□□□□ -0.62
TMEM53-209	ENST00000495630	RNF185	Q96GF1	192 aa		11.19	□□□□□ -0.62
TMEM53-209	ENST00000495630	UBE2G1	P62253	170 aa		11.18	□□□□□ -0.62
TMEM53-209	ENST00000495630	RBX1	P62877	108 aa		11.18	□□□□□ -0.62
TMEM53-209	ENST00000495630	ZNF56	Q15929	161 aa		11.18	□□□□□ -0.62
TMEM53-209	ENST00000495630	NTM-AS1	Q6ZSK4	140 aa		11.18	□□□□□ -0.62
TMEM53-209	ENST00000495630	LINC00269	Q8N2A0	174 aa		11.18	□□□□□ -0.62
TMEM53-209	ENST00000495630	VAX2	Q9UIW0	290 aa		11.18	□□□□□ -0.62
TMEM53-209	ENST00000495630		A6NHS1	94 aa		11.17	□□□□□ -0.62
TMEM53-209	ENST00000495630	LTA	P01374	205 aa		11.17	□□□□□ -0.62
TMEM53-209	ENST00000495630	DEFA1	P59665	94 aa		11.17	□□□□□ -0.62
TMEM53-209	ENST00000495630	DEFA3	P59666	94 aa		11.17	□□□□□ -0.62
TMEM53-209	ENST00000495630	ZNF471	Q9BX82	626 aa	Predicted RBP	11.17	□□□□□ -0.62
TMEM53-209	ENST00000495630	TCEAL7	Q9BRU2	100 aa		11.16	□□□□□ -0.62
TMEM53-209	ENST00000495630	DERL1	Q9BUN8	251 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms