RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 SPART-AS1P0CW21 52 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 AZU1P20160 251 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 CKS2P33552 79 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 FXYD7P58549 80 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 KRTAP10-11P60412 298 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 DEFB121Q5J5C9 76 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 MRPL54Q6P161 138 aaKnown RBP5.04□□□□□ -1.6
SYNE1-229ENST00000490866 TMEM136Q6ZRR5 245 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 ZNF575Q86XF7 245 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 DNAJC30Q96LL9 226 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 C20orf78Q9BR46 151 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 EDA2RQ9HAV5 297 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 GSN-AS1Q9NRJ2 163 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 C11orf21Q9P2W6 132 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 IGHV3OR16-12A0A075B7B8 117 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 TRBV10-1A0A0K0K1A3 114 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 PRSS47A8MTI9 375 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 SPINK4O60575 86 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 SCO1O75880 301 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 TRGC2P03986 189 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 FRMD6-AS1P0C7T7 363 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 GZMBP10144 247 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 PMCHP20382 165 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 Q0VG73 95 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 SH2D6Q7Z4S9 175 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 POM121L12Q8N7R1 296 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 C11orf72Q8NBR9 251 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 OR4C5Q8NGB2 326 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 OR10AG1Q8NH19 301 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 MDFICQ9P1T7 246 aa5.03□□□□□ -1.6
SYNE1-229ENST00000490866 MGAM2Q2M2H8 2515 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 TRGV2A0A075B6R0 118 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 TRAV4A0A0B4J268 109 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 F5H697 171 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 RAB4AP20338 218 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 AKR1D1P51857 326 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 SMAGPQ0VAQ4 97 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 TMEM97Q5BJF2 176 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 IL17DQ8TAD2 202 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 C11orf68Q9H3H3 251 aaKnown RBP5.02□□□□□ -1.61
SYNE1-229ENST00000490866 NXT2Q9NPJ8 142 aaKnown RBP5.02□□□□□ -1.61
SYNE1-229ENST00000490866 U3KQK5 164 aa5.02□□□□□ -1.61
SYNE1-229ENST00000490866 NBEAL1Q6ZS30 2694 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 ANK2Q01484 3957 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 TRGV1A0A0A0MS02 117 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 TRBV6-4A0A1B0GX49 114 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 VCYO14598 125 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 RS1O15537 224 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 RBMY1A1P0DJD3 496 aaKnown RBP5.01□□□□□ -1.61
SYNE1-229ENST00000490866 RBMY1CP0DJD4 496 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 HOXA5P20719 270 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 EVI2AP22794 236 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 RPL32P62910 135 aaKnown RBP5.01□□□□□ -1.61
SYNE1-229ENST00000490866 RBMY1FQ15415 496 aaKnown RBP5.01□□□□□ -1.61
SYNE1-229ENST00000490866 C14orf178Q8N769 122 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-229ENST00000490866 CHCHD1Q96BP2 118 aaKnown RBP5.01□□□□□ -1.61
SYNE1-229ENST00000490866 PACRGQ96M98 296 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-229ENST00000490866 WFDC10AQ9H1F0 79 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 NOP10Q9NPE3 64 aaKnown RBP5.01□□□□□ -1.61
SYNE1-229ENST00000490866 NIT2Q9NQR4 276 aa5.01□□□□□ -1.61
SYNE1-229ENST00000490866 H3BNG1 76 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 IGHV3-53P01767 116 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 CRYGDP07320 174 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 DEFB135Q30KP9 77 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 COA6Q5JTJ3 125 aaKnown RBP5□□□□□ -1.61
SYNE1-229ENST00000490866 BAGE3Q86Y29 109 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 LINC00612Q8N6U2 182 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 PRSS3P2Q8NHM4 247 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 PRELID3AQ96N28 172 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 B9D2Q9BPU9 175 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 TM2D3Q9BRN9 247 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 PRADC1Q9BSG0 188 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 ALKBH7Q9BT30 221 aaPredicted RBP5□□□□□ -1.61
SYNE1-229ENST00000490866 MAP1LC3AQ9H492 121 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 ST20Q9HBF5 79 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 TNFRSF18Q9Y5U5 241 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 X6R8D5 127 aa5□□□□□ -1.61
SYNE1-229ENST00000490866 NOTCH1P46531 2555 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 TRGV4A0A0C4DH28 118 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 TRBV6-5A0A0K0K1A5 114 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 ATP5G1P05496 136 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 LINC00614P0C842 121 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 MRPL51Q4U2R6 128 aaKnown RBP4.99□□□□□ -1.61
SYNE1-229ENST00000490866 CFAP126Q5VTH2 177 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 DAZ4Q86SG3 579 aaKnown RBP4.99□□□□□ -1.61
SYNE1-229ENST00000490866 AMN1Q8IY45 258 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 TMEM18Q96B42 140 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 KIR2DL4Q99706 377 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 KRTAP4-7Q9BYR0 210 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 DAZ3Q9NR90 486 aaKnown RBP4.99□□□□□ -1.61
SYNE1-229ENST00000490866 MSRB1Q9NZV6 116 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 DKK2Q9UBU2 259 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 PRO0255Q9UI72 69 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 KIF25-AS1Q9Y6Z4 181 aa4.99□□□□□ -1.61
SYNE1-229ENST00000490866 D6R8Y8 96 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 K7EIL1 84 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BKO60814 126 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 TNFRSF6BO95407 300 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 NCR2O95944 276 aa4.98□□□□□ -1.61
SYNE1-229ENST00000490866 HIST1H2BJP06899 126 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms