RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 LINC00694P0DN24 101 aa12.28□□□□□ -0.44
COL9A3-214ENST00000490398 BCL2P10415 239 aa12.28□□□□□ -0.44
COL9A3-214ENST00000490398 MEF2BQ02080 365 aaPredicted RBP12.28□□□□□ -0.44
COL9A3-214ENST00000490398 FAM74A4Q5TZK3 123 aa12.28□□□□□ -0.44
COL9A3-214ENST00000490398 SYT8Q8NBV8 401 aa12.28□□□□□ -0.44
COL9A3-214ENST00000490398 OR10AG1Q8NH19 301 aa12.28□□□□□ -0.44
COL9A3-214ENST00000490398 LY96Q9Y6Y9 160 aa12.28□□□□□ -0.44
COL9A3-214ENST00000490398 TEX46H3BTG2 121 aa12.27□□□□□ -0.45
COL9A3-214ENST00000490398 DNAH10OSP0CZ25 163 aa12.27□□□□□ -0.45
COL9A3-214ENST00000490398 TIRAPP58753 221 aa12.27□□□□□ -0.45
COL9A3-214ENST00000490398 GZMBP10144 247 aa12.26□□□□□ -0.45
COL9A3-214ENST00000490398 SH2D6Q7Z4S9 175 aa12.26□□□□□ -0.45
COL9A3-214ENST00000490398 ZFP82Q8N141 532 aa12.26□□□□□ -0.45
COL9A3-214ENST00000490398 MED9Q9NWA0 146 aa12.26□□□□□ -0.45
COL9A3-214ENST00000490398 IFNA1P01562 189 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 CXCL1P09341 107 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 MED14OSP0DP75 135 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 KRTAP10-2P60368 255 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 SSTP61278 116 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 Q8N3U1 123 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 ATP6V0E2Q8NHE4 81 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 SSBP4Q9BWG4 385 aaPredicted RBP12.25□□□□□ -0.45
COL9A3-214ENST00000490398 VAX2Q9UIW0 290 aa12.25□□□□□ -0.45
COL9A3-214ENST00000490398 FAT1Q14517 4588 aa12.24□□□□□ -0.45
COL9A3-214ENST00000490398 C19orf71A6NCJ1 209 aa12.24□□□□□ -0.45
COL9A3-214ENST00000490398 SNAI2O43623 268 aa12.24□□□□□ -0.45
COL9A3-214ENST00000490398 PDE6DO43924 150 aa12.24□□□□□ -0.45
COL9A3-214ENST00000490398 BTF3P20290 206 aaKnown RBP12.24□□□□□ -0.45
COL9A3-214ENST00000490398 SPATA12Q7Z6I5 190 aa12.24□□□□□ -0.45
COL9A3-214ENST00000490398 GTSF1LQ9H1H1 148 aa12.24□□□□□ -0.45
COL9A3-214ENST00000490398 FUSP35637 526 aaKnown RBP eCLIP12.23□□□□□ -0.45
COL9A3-214ENST00000490398 GNG4P50150 75 aa12.23□□□□□ -0.45
COL9A3-214ENST00000490398 OR10J3Q5JRS4 329 aa12.23□□□□□ -0.45
COL9A3-214ENST00000490398 LELP1Q5T871 98 aa12.23□□□□□ -0.45
COL9A3-214ENST00000490398 IGHV3-38A0A0C4DH36 116 aa12.22□□□□□ -0.45
COL9A3-214ENST00000490398 RBFOX3A6NFN3 312 aa12.22□□□□□ -0.45
COL9A3-214ENST00000490398 RHODO00212 210 aa12.22□□□□□ -0.45
COL9A3-214ENST00000490398 EVI2AP22794 236 aa12.22□□□□□ -0.45
COL9A3-214ENST00000490398 TRAV9-2A0A087WT02 112 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 IGHV3-30P01768 117 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 IGHV3-33P01772 117 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 OR5AL1P0C617 328 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 IGHV3-30-3P0DP02 117 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 IGHV3-30-5P0DP03 117 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 LINC01556Q5JQF7 62 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 MSRB1Q9NZV6 116 aa12.21□□□□□ -0.45
COL9A3-214ENST00000490398 TRAV8-6A0A0B4J262 113 aa12.2□□□□□ -0.46
COL9A3-214ENST00000490398 C16orf90A8MZG2 172 aa12.2□□□□□ -0.46
COL9A3-214ENST00000490398 IGLC6P0CF74 106 aa12.2□□□□□ -0.46
COL9A3-214ENST00000490398 OR2D3Q8NGH3 330 aa12.2□□□□□ -0.46
COL9A3-214ENST00000490398 LYPD6BQ8NI32 183 aa12.2□□□□□ -0.46
COL9A3-214ENST00000490398 KIF25-AS1Q9Y6Z4 181 aa12.2□□□□□ -0.46
COL9A3-214ENST00000490398 K7EN84 100 aa12.19□□□□□ -0.46
COL9A3-214ENST00000490398 TPPP3Q9BW30 176 aa12.19□□□□□ -0.46
COL9A3-214ENST00000490398 KRTAP17-1Q9BYP8 105 aa12.19□□□□□ -0.46
COL9A3-214ENST00000490398 BLOC1S1P78537 153 aa12.18□□□□□ -0.46
COL9A3-214ENST00000490398 SPANXN1Q5VSR9 72 aa12.18□□□□□ -0.46
COL9A3-214ENST00000490398 NUDT10Q8NFP7 164 aa12.17□□□□□ -0.46
COL9A3-214ENST00000490398 OCC1Q8TAD7 63 aa12.17□□□□□ -0.46
COL9A3-214ENST00000490398 DAZAP1Q96EP5 407 aaKnown RBP12.17□□□□□ -0.46
COL9A3-214ENST00000490398 SMIM12Q96EX1 92 aa12.17□□□□□ -0.46
COL9A3-214ENST00000490398 NUDT11Q96G61 164 aa12.17□□□□□ -0.46
COL9A3-214ENST00000490398 IBA57-AS1B1ANH7 110 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 P01737 135 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 TAGLN2P37802 199 aaKnown RBP12.16□□□□□ -0.46
COL9A3-214ENST00000490398 UBE2D3P61077 147 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 UBE2D2P62837 147 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 ZNF56Q15929 161 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 NFE4Q86UQ8 179 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 FER1L6-AS1Q8NA97 138 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 NEXN-AS1Q8NBZ9 246 aa12.16□□□□□ -0.46
COL9A3-214ENST00000490398 RNASE7Q9H1E1 156 aaKnown RBP12.16□□□□□ -0.46
COL9A3-214ENST00000490398 A0A087WTM6 91 aa12.15□□□□□ -0.46
COL9A3-214ENST00000490398 K7EP13 123 aa12.15□□□□□ -0.46
COL9A3-214ENST00000490398 RAB4BP61018 213 aa12.15□□□□□ -0.46
COL9A3-214ENST00000490398 C10orf126Q8N4M7 172 aa12.15□□□□□ -0.46
COL9A3-214ENST00000490398 Q9HAA7 133 aa12.15□□□□□ -0.46
COL9A3-214ENST00000490398 TRBV10-1A0A0K0K1A3 114 aa12.14□□□□□ -0.47
COL9A3-214ENST00000490398 RPS20P60866 119 aaKnown RBP12.14□□□□□ -0.47
COL9A3-214ENST00000490398 TOR2AQ5JU69 321 aa12.14□□□□□ -0.47
COL9A3-214ENST00000490398 DAZ4Q86SG3 579 aaKnown RBP12.14□□□□□ -0.47
COL9A3-214ENST00000490398 OR10G8Q8NGN5 311 aa12.14□□□□□ -0.47
COL9A3-214ENST00000490398 DAZ3Q9NR90 486 aaKnown RBP12.14□□□□□ -0.47
COL9A3-214ENST00000490398 ERVFC1-1P60608 527 aa12.13□□□□□ -0.47
COL9A3-214ENST00000490398 LYZL1Q6UWQ5 148 aa12.13□□□□□ -0.47
COL9A3-214ENST00000490398 DNAJC30Q96LL9 226 aa12.13□□□□□ -0.47
COL9A3-214ENST00000490398 TRBV7-3A0A075B6L6 115 aa12.12□□□□□ -0.47
COL9A3-214ENST00000490398 F5H697 171 aa12.12□□□□□ -0.47
COL9A3-214ENST00000490398 CEBPGP53567 150 aa12.12□□□□□ -0.47
COL9A3-214ENST00000490398 RPL36AP83881 106 aaKnown RBP12.12□□□□□ -0.47
COL9A3-214ENST00000490398 RPL36ALQ969Q0 106 aaKnown RBP12.12□□□□□ -0.47
COL9A3-214ENST00000490398 AP1S3Q96PC3 154 aa12.12□□□□□ -0.47
COL9A3-214ENST00000490398 VPS13BQ7Z7G8 4022 aa12.12□□□□□ -0.47
COL9A3-214ENST00000490398 TMEM250H0YL14 139 aa12.11□□□□□ -0.47
COL9A3-214ENST00000490398 A0A087WWC5 75 aa12.1□□□□□ -0.47
COL9A3-214ENST00000490398 LRCOL1A6NCL2 159 aa12.1□□□□□ -0.47
COL9A3-214ENST00000490398 NIT1Q86X76 327 aa12.1□□□□□ -0.47
COL9A3-214ENST00000490398 FAM210AQ96ND0 272 aa12.1□□□□□ -0.47
COL9A3-214ENST00000490398 RPP21Q9H633 154 aaKnown RBP12.1□□□□□ -0.47
COL9A3-214ENST00000490398 MGPP08493 103 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms