RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 DNLZQ5SXM8 178 aa8.12□□□□□ -1.11
CPSF3-204ENST00000489403 FAM74A4Q5TZK3 123 aa8.12□□□□□ -1.11
CPSF3-204ENST00000489403 SYT8Q8NBV8 401 aa8.12□□□□□ -1.11
CPSF3-204ENST00000489403 RMI2Q96E14 147 aa8.12□□□□□ -1.11
CPSF3-204ENST00000489403 ZC2HC1AQ96GY0 325 aa8.12□□□□□ -1.11
CPSF3-204ENST00000489403 KLK12Q9UKR0 248 aa8.12□□□□□ -1.11
CPSF3-204ENST00000489403 URGCP-MRPS24S4R325 110 aa8.12□□□□□ -1.11
CPSF3-204ENST00000489403 LRP1Q07954 4544 aaKnown RBP8.11□□□□□ -1.11
CPSF3-204ENST00000489403 A0A087WWL8 130 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 GRIFINA4D1Z8 144 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 KRBOX1C9JBD0 128 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 M0R036 132 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 IFNA7P01567 189 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 Q5BKY6 102 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 RPL7L1Q6DKI1 246 aaKnown RBP8.11□□□□□ -1.11
CPSF3-204ENST00000489403 Q8N976 141 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 OR11H4Q8NGC9 324 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 FAT3Q8TDW7 4589 aa8.11□□□□□ -1.11
CPSF3-204ENST00000489403 CTXND1A0A1B0GTU2 59 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 FAM74A7A6NL05 159 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 LCE2BO14633 110 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 SH2D1AO60880 128 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 SEC11BP0C7V7 166 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 COX8CQ7Z4L0 72 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 HIST1H2BAQ96A08 127 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 UBE2WQ96B02 151 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 SFRP2Q96HF1 295 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 CHCHD7Q9BUK0 85 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 CHAC1Q9BUX1 264 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 PKHD1L1Q86WI1 4243 aa8.1□□□□□ -1.11
CPSF3-204ENST00000489403 HMCN2Q8NDA2 5059 aa8.09□□□□□ -1.11
CPSF3-204ENST00000489403 A0A087WX48 190 aa8.09□□□□□ -1.11
CPSF3-204ENST00000489403 M0R381 172 aa8.09□□□□□ -1.11
CPSF3-204ENST00000489403 ATRAIDQ6UW56 229 aa8.09□□□□□ -1.11
CPSF3-204ENST00000489403 CIRBP-AS1Q8TBR5 109 aa8.09□□□□□ -1.11
CPSF3-204ENST00000489403 PHLDA3Q9Y5J5 127 aa8.09□□□□□ -1.11
CPSF3-204ENST00000489403 TRBV10-1A0A0K0K1A3 114 aa8.08□□□□□ -1.12
CPSF3-204ENST00000489403 TPT1P13693 172 aaKnown RBP8.08□□□□□ -1.12
CPSF3-204ENST00000489403 UBE2D3P61077 147 aa8.08□□□□□ -1.12
CPSF3-204ENST00000489403 UBE2D2P62837 147 aa8.08□□□□□ -1.12
CPSF3-204ENST00000489403 RPL36AP83881 106 aaKnown RBP8.08□□□□□ -1.12
CPSF3-204ENST00000489403 FAM162BQ5T6X4 162 aa8.08□□□□□ -1.12
CPSF3-204ENST00000489403 RPL36ALQ969Q0 106 aaKnown RBP8.08□□□□□ -1.12
CPSF3-204ENST00000489403 NKX6-2Q9C056 277 aaPredicted RBP8.08□□□□□ -1.12
CPSF3-204ENST00000489403 MED28Q9H204 178 aa8.08□□□□□ -1.12
CPSF3-204ENST00000489403 ZFP30Q9Y2G7 519 aa8.08□□□□□ -1.12
CPSF3-204ENST00000489403 TMSB15BA0A087X1C1 80 aa8.07□□□□□ -1.12
CPSF3-204ENST00000489403 BORCS7-ASMTA0A0B4J1R7 106 aa8.07□□□□□ -1.12
CPSF3-204ENST00000489403 ELOBQ15370 118 aa8.07□□□□□ -1.12
CPSF3-204ENST00000489403 ZNF674Q2M3X9 581 aa8.07□□□□□ -1.12
CPSF3-204ENST00000489403 ZFP82Q8N141 532 aa8.07□□□□□ -1.12
CPSF3-204ENST00000489403 INO80EQ8NBZ0 244 aaPredicted RBP8.07□□□□□ -1.12
CPSF3-204ENST00000489403 FMC1Q96HJ9 113 aa8.07□□□□□ -1.12
CPSF3-204ENST00000489403 TRBV7-3A0A075B6L6 115 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 FXYD6-FXYD2A0A087WZ82 144 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 IGLV2-8P01709 118 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 GIPP09681 153 aaPredicted RBP8.06□□□□□ -1.12
CPSF3-204ENST00000489403 UBE2G1P62253 170 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 Q0VG73 95 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 AKR1C8PQ5T2L2 129 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 KCNIP4Q6PIL6 250 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 ENHOQ6UWT2 76 aa8.06□□□□□ -1.12
CPSF3-204ENST00000489403 TRBV6-1A0A0K0K1D8 114 aa8.05□□□□□ -1.12
CPSF3-204ENST00000489403 PTTG1O95997 202 aa8.05□□□□□ -1.12
CPSF3-204ENST00000489403 LTAP01374 205 aa8.05□□□□□ -1.12
CPSF3-204ENST00000489403 SERTAD4-AS1Q5TG53 156 aa8.05□□□□□ -1.12
CPSF3-204ENST00000489403 OR10G8Q8NGN5 311 aa8.05□□□□□ -1.12
CPSF3-204ENST00000489403 C1orf43Q9BWL3 253 aa8.05□□□□□ -1.12
CPSF3-204ENST00000489403 TRBV6-8A0A0A6YYG3 113 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 MAP1LC3B2A6NCE7 125 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 TMEM262E9PQX1 116 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 OXTP01178 125 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 C14orf177Q52M58 125 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 MPV17L2Q567V2 206 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 C15orf54Q8N8G6 183 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 NEXN-AS1Q8NBZ9 246 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 MAP1LC3BQ9GZQ8 125 aa8.04□□□□□ -1.12
CPSF3-204ENST00000489403 CRPP02741 224 aa8.03□□□□□ -1.12
CPSF3-204ENST00000489403 AKR1C3P42330 323 aa8.03□□□□□ -1.12
CPSF3-204ENST00000489403 RAB4BP61018 213 aa8.03□□□□□ -1.12
CPSF3-204ENST00000489403 RPL19P84098 196 aaKnown RBP8.03□□□□□ -1.12
CPSF3-204ENST00000489403 ZNF56Q15929 161 aa8.03□□□□□ -1.12
CPSF3-204ENST00000489403 TCEAL7Q9BRU2 100 aa8.03□□□□□ -1.12
CPSF3-204ENST00000489403 USP17L23D6RBM5 183 aa8.02□□□□□ -1.13
CPSF3-204ENST00000489403 G3V3Q6 166 aa8.02□□□□□ -1.13
CPSF3-204ENST00000489403 ANGP03950 147 aaKnown RBP8.02□□□□□ -1.13
CPSF3-204ENST00000489403 FHITP49789 147 aa8.02□□□□□ -1.13
CPSF3-204ENST00000489403 CST9LP1Q5W188 147 aa8.02□□□□□ -1.13
CPSF3-204ENST00000489403 PRR27Q6MZM9 219 aa8.02□□□□□ -1.13
CPSF3-204ENST00000489403 OR10AG1Q8NH19 301 aa8.02□□□□□ -1.13
CPSF3-204ENST00000489403 HLA-DQA1P01909 254 aa8.01□□□□□ -1.13
CPSF3-204ENST00000489403 CXCL1P09341 107 aa8.01□□□□□ -1.13
CPSF3-204ENST00000489403 RPL37AP61513 92 aaKnown RBP8.01□□□□□ -1.13
CPSF3-204ENST00000489403 STOML3Q8TAV4 291 aa8.01□□□□□ -1.13
CPSF3-204ENST00000489403 CYTL1Q9NRR1 136 aa8.01□□□□□ -1.13
CPSF3-204ENST00000489403 UBR4Q5T4S7 5183 aa8.01□□□□□ -1.13
CPSF3-204ENST00000489403 SNAI2O43623 268 aa8□□□□□ -1.13
CPSF3-204ENST00000489403 PAGE4O60829 102 aa8□□□□□ -1.13
CPSF3-204ENST00000489403 HNRNPA3P51991 378 aaKnown RBP8□□□□□ -1.13
CPSF3-204ENST00000489403 NTM-AS1Q6ZSK4 140 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 144.4 ms