RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 Q56UQ5 140 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 LGALS9CQ6DKI2 356 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 C2orf91Q6ZV80 131 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 TMEM251Q8N6I4 163 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 PTH2Q96A98 100 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 OR4C12Q96R67 309 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 FAM103A1Q9BTL3 118 aaKnown RBP1.78□□□□□ -2.12
USP48-209ENST00000487880 MRPL32Q9BYC8 188 aaKnown RBP1.78□□□□□ -2.12
USP48-209ENST00000487880 SPANXB1Q9NS25 103 aaPredicted RBP1.78□□□□□ -2.12
USP48-209ENST00000487880 PSENENQ9NZ42 101 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 LHFPL6Q9Y693 200 aa1.78□□□□□ -2.12
USP48-209ENST00000487880 DOCK10Q96BY6 2186 aa1.78□□□□□ -2.13
USP48-209ENST00000487880 CPAMD8Q8IZJ3 1885 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 TRBV20OR9-2A0A075B6H5 130 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 IGKV1-9A0A0C4DH69 117 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 TEX50A0A1B0GTY4 177 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 A0A1B0GX51 115 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 A0A1W2PRE2 83 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 C21orf140B9A014 251 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 PGLYRP1O75594 196 aaPredicted RBP1.77□□□□□ -2.13
USP48-209ENST00000487880 KLF7O75840 302 aaPredicted RBP1.77□□□□□ -2.13
USP48-209ENST00000487880 NAPSAO96009 420 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 APOA2P02652 100 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 SPINK8P0C7L1 97 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 SMIM13P0DJ93 91 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 FGF6P10767 208 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 FKBP2P26885 142 aaKnown RBP1.77□□□□□ -2.13
USP48-209ENST00000487880 G6PCP35575 357 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 CSN1S1P47710 185 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 TAS2R45P59539 299 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 RPS28P62857 69 aaKnown RBP1.77□□□□□ -2.13
USP48-209ENST00000487880 GNG3P63215 75 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 HES1Q14469 280 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 CLEC12BQ2HXU8 276 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 TMEM78Q5T7P6 136 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 LYRM7Q5U5X0 104 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 Q6ZUT4 128 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 C6orf201Q7Z4U5 140 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 VN1R4Q7Z5H5 301 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 TEX29Q8N6K0 151 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.77□□□□□ -2.13
USP48-209ENST00000487880 LINC01600Q96MT4 127 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 UPK3BQ9BT76 320 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 NPCDR1Q9BY65 106 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 MAP1LC3AQ9H492 121 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 TMEM167BQ9NRX6 74 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.77□□□□□ -2.13
USP48-209ENST00000487880 UFC1Q9Y3C8 167 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 LINC00312Q9Y6C7 94 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 HEATR5BQ9P2D3 2071 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 FANCMQ8IYD8 2048 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 EML5Q05BV3 1969 aa1.77□□□□□ -2.13
USP48-209ENST00000487880 KIAA2026Q5HYC2 2103 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 ATG2AQ2TAZ0 1938 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 A0A087WX48 190 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 A0A0J9YX75 114 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 UBE2L5PA0A1B0GUS4 154 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 SPAARA0A1B0GVQ0 90 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 FABP5P3A8MUU1 101 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 F2Z2F3 143 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 BRI3O95415 125 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 APOMO95445 188 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 ATP5G1P05496 136 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 RPS27P42677 84 aaKnown RBP1.76□□□□□ -2.13
USP48-209ENST00000487880 ATP5G3P48201 142 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 FXYD4P59646 89 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 RPL30P62888 115 aaKnown RBP1.76□□□□□ -2.13
USP48-209ENST00000487880 IBA57Q5T440 356 aaKnown RBP1.76□□□□□ -2.13
USP48-209ENST00000487880 Q6AWC8 147 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 ZNF818PQ6ZRF7 136 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 FAM19A2Q8N3H0 131 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 SMIM20Q8N5G0 67 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 C2orf73Q8N5S3 287 aaPredicted RBP1.76□□□□□ -2.13
USP48-209ENST00000487880 NUP35Q8NFH5 326 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 OR51H1Q8NH63 302 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 ZNRF2Q8NHG8 242 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 WFDC5Q8TCV5 224 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 CT55Q8WUE5 264 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 PPDPFLQ8WWR9 84 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 C16orf95Q9H693 158 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 SS18L2Q9UHA2 77 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 PRRC2BQ5JSZ5 2229 aaKnown RBP1.76□□□□□ -2.13
USP48-209ENST00000487880 NUMA1Q14980 2115 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 DOCK3Q8IZD9 2030 aa1.76□□□□□ -2.13
USP48-209ENST00000487880 TRBV20-1A0A075B6N2 111 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 TMED7-TICAM2A0A0A6YYA0 188 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 H3BSH0 61 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 CNIH1O95406 144 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 ARL14EPLP0DKL9 152 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 IFITM1P13164 125 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 GCHFRP30047 84 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 FOXA3P55318 350 aaPredicted RBP1.75□□□□□ -2.13
USP48-209ENST00000487880 RBM11P57052 281 aaKnown RBP1.75□□□□□ -2.13
USP48-209ENST00000487880 HBBP68871 147 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 CATR1Q13166 79 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 ETDBQ3ZM63 59 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 SPANXN5Q5MJ07 72 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 C10orf128Q5T292 105 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 SPATA31B1PQ5VZV4 182 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 Q6ZS52 159 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms