RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 BUB3O43684 328 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 BRI3O95415 125 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 LINC00694P0DN24 101 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 ATP5J2P56134 94 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 KLRB1Q12918 225 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 DEFB124Q8NES8 71 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 DNAJC30Q96LL9 226 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 PSMG3-AS1Q96PY0 264 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 IGHV4-4A0A075B6R2 117 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 NPFFO15130 113 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 GAGE2AQ6NT46 116 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 C9orf139Q6ZV77 190 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 PIP4P1Q86T03 277 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 EEF1AKMT3Q96AZ1 226 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 TIMM21Q9BVV7 248 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 FRYQ5TBA9 3013 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 TIMM17AQ99595 171 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 MSRB2Q9Y3D2 182 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 TRBV30A0A0K0K1B3 111 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 NDUFA7O95182 113 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 UBE2E1P51965 193 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 C3orf22Q8N5N4 141 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 MRPL53Q96EL3 112 aaKnown RBP4.74□□□□□ -1.65
VPS13D-209ENST00000487188 SPXQ9BT56 116 aa4.74□□□□□ -1.65
VPS13D-209ENST00000487188 CSDC2Q9Y534 153 aaKnown RBP4.74□□□□□ -1.65
VPS13D-209ENST00000487188 HERVK_113P63121 156 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 C9orf47Q6ZRZ4 202 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 LINC00477Q96M19 166 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 LINC00527Q9UJ94 153 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 LAMA5O15230 3695 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 OOSP1A8MZH6 123 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 CDX4O14627 284 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-209ENST00000487188 GNRH2O43555 120 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 CRYGDP07320 174 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 ELANEP08246 267 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 C22orf34Q6ZV56 151 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 FAM215AQ9Y5M1 114 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 SPTBN4Q9H254 2564 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 F8W735 103 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-209ENST00000487188 H7C423 109 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 OVOL1O14753 267 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 UQCRQO14949 82 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 ZNF883P0CG24 379 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 CD28P10747 220 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 ZNF672Q499Z4 452 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-209ENST00000487188 PRR9Q5T870 116 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 ZNRF2Q8NHG8 242 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 NRGNQ92686 78 aa4.73□□□□□ -1.65
VPS13D-209ENST00000487188 A0A0J9YXV3 536 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 FAM240AA0A1B0GVK7 77 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 ACYP1P07311 99 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 SUMO4Q6EEV6 95 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 NPBQ8NG41 125 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 LINC01587Q99440 93 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 OPRPNQ99935 248 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-209ENST00000487188 SPANXDQ9BXN6 97 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 SPTBN1Q01082 2364 aaKnown RBP4.72□□□□□ -1.65
VPS13D-209ENST00000487188 COL27A1Q8IZC6 1860 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-209ENST00000487188 A0A0J9YXY3 114 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 LOC107984640A0A0U1RRK4 108 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 IGF1P05019 195 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 ZNF876PQ49A33 203 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 DUX5Q96PT3 197 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 SPTAN1Q13813 2472 aaKnown RBP4.72□□□□□ -1.65
VPS13D-209ENST00000487188 SMIM9A6NGZ8 99 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 NDUFA12Q9UI09 145 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 LENEPQ9Y5L5 61 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 FREM2Q5SZK8 3169 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 MED13LQ71F56 2210 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 TMEM223A0PJW6 202 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 IGIPA6NJ69 53 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 TSHBP01222 138 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 ZNF22P17026 224 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-209ENST00000487188 ZNF575Q86XF7 245 aa4.72□□□□□ -1.65
VPS13D-209ENST00000487188 NBASA2RRP1 2371 aa4.71□□□□□ -1.65
VPS13D-209ENST00000487188 TRBV7-7A0A0K0K1E9 115 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 FAM110DQ8TAY7 271 aaPredicted RBP4.71□□□□□ -1.66
VPS13D-209ENST00000487188 DEFB1P60022 68 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 CIRBPQ14011 172 aaKnown RBP4.71□□□□□ -1.66
VPS13D-209ENST00000487188 LINC00643Q86TS7 51 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 ZFAND3Q9H8U3 227 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 JPT2Q9H910 190 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 KLK5Q9Y337 293 aaPredicted RBP4.71□□□□□ -1.66
VPS13D-209ENST00000487188 TRAV41A0A0B4J266 112 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 B9A039 149 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 IMUPQ9GZP8 106 aa4.71□□□□□ -1.66
VPS13D-209ENST00000487188 A0A0U1RRA0 63 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 LST1O00453 97 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 TRACP01848 142 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 IGHV3-30-3P0DP02 117 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 MED14OSP0DP75 135 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 VMO1Q7Z5L0 202 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 LRRC75A-AS1Q8N1F1 130 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 CELSR3Q9NYQ7 3312 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 E7EQL1 145 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 F6UB75 175 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 I3L3M4 83 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 ATP6V0E1O15342 81 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 RHOHQ15669 191 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 IGHV7-81A0A0B4J1V7 117 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms