RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 OR5AL1P0C617 328 aa10.14□□□□□ -0.79
USP4-212ENST00000486549 UFSP1Q6NVU6 142 aa10.14□□□□□ -0.79
USP4-212ENST00000486549 FER1L6-AS1Q8NA97 138 aa10.14□□□□□ -0.79
USP4-212ENST00000486549 NUDT10Q8NFP7 164 aa10.14□□□□□ -0.79
USP4-212ENST00000486549 NUDT11Q96G61 164 aa10.14□□□□□ -0.79
USP4-212ENST00000486549 SMIM7Q9BQ49 75 aa10.14□□□□□ -0.79
USP4-212ENST00000486549 SSBP4Q9BWG4 385 aaPredicted RBP10.14□□□□□ -0.79
USP4-212ENST00000486549 RNASE7Q9H1E1 156 aaKnown RBP10.14□□□□□ -0.79
USP4-212ENST00000486549 XKRY2A2RUG3 117 aa10.13□□□□□ -0.79
USP4-212ENST00000486549 GAGE12JA6NER3 117 aa10.13□□□□□ -0.79
USP4-212ENST00000486549 CRYGDP07320 174 aa10.13□□□□□ -0.79
USP4-212ENST00000486549 GAGE1Q13065 139 aa10.13□□□□□ -0.79
USP4-212ENST00000486549 GAGE4Q13068 117 aa10.13□□□□□ -0.79
USP4-212ENST00000486549 GAGE5Q13069 117 aa10.13□□□□□ -0.79
USP4-212ENST00000486549 GAGE13Q4V321 117 aa10.13□□□□□ -0.79
USP4-212ENST00000486549 C14orf178Q8N769 122 aaPredicted RBP10.13□□□□□ -0.79
USP4-212ENST00000486549 ZNF727A8MUV8 499 aa10.12□□□□□ -0.79
USP4-212ENST00000486549 SIVA1O15304 175 aa10.12□□□□□ -0.79
USP4-212ENST00000486549 IGLC6P0CF74 106 aa10.12□□□□□ -0.79
USP4-212ENST00000486549 ZNF56Q15929 161 aa10.12□□□□□ -0.79
USP4-212ENST00000486549 C1orf134Q5TEV5 83 aa10.12□□□□□ -0.79
USP4-212ENST00000486549 SH2D6Q7Z4S9 175 aa10.12□□□□□ -0.79
USP4-212ENST00000486549 RPP21Q9H633 154 aaKnown RBP10.12□□□□□ -0.79
USP4-212ENST00000486549 RTL8CO15255 209 aa10.11□□□□□ -0.79
USP4-212ENST00000486549 TTC32Q5I0X7 151 aa10.11□□□□□ -0.79
USP4-212ENST00000486549 WFDC10BQ8IUB3 73 aa10.11□□□□□ -0.79
USP4-212ENST00000486549 KRTAP1-5Q9BYS1 174 aa10.11□□□□□ -0.79
USP4-212ENST00000486549 Q9UF83 564 aa10.11□□□□□ -0.79
USP4-212ENST00000486549 NDUFS6O75380 124 aaKnown RBP10.1□□□□□ -0.79
USP4-212ENST00000486549 SRSF3P84103 164 aaKnown RBP10.1□□□□□ -0.79
USP4-212ENST00000486549 LYZL1Q6UWQ5 148 aa10.1□□□□□ -0.79
USP4-212ENST00000486549 ATP6V0E2Q8NHE4 81 aa10.1□□□□□ -0.79
USP4-212ENST00000486549 AP1S3Q96PC3 154 aa10.1□□□□□ -0.79
USP4-212ENST00000486549 PRSS29PA6NIE9 313 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 GATCO43716 136 aaKnown RBP10.09□□□□□ -0.79
USP4-212ENST00000486549 SMIM17P0DL12 118 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 ERVFC1-1P60608 527 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 CACNG7P62955 275 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 PEA15Q15121 130 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 C6orf223Q8N319 242 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 LY96Q9Y6Y9 160 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 DNAH17Q9UFH2 4485 aa10.09□□□□□ -0.79
USP4-212ENST00000486549 A0A1W2PPQ1 181 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 C9JQL5 133 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 F5H697 171 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 LINC00694P0DN24 101 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 OR10J3Q5JRS4 329 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 LINC01551Q86U37 167 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 GTSF1LQ9H1H1 148 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 MSRB1Q9NZV6 116 aa10.08□□□□□ -0.8
USP4-212ENST00000486549 F2Z2F3 143 aa10.07□□□□□ -0.8
USP4-212ENST00000486549 MGPP08493 103 aa10.07□□□□□ -0.8
USP4-212ENST00000486549 CTRLP40313 264 aa10.07□□□□□ -0.8
USP4-212ENST00000486549 TIRAPP58753 221 aa10.07□□□□□ -0.8
USP4-212ENST00000486549 RAB4BP61018 213 aa10.07□□□□□ -0.8
USP4-212ENST00000486549 FAM231DQ6ZW35 169 aa10.07□□□□□ -0.8
USP4-212ENST00000486549 FAT2Q9NYQ8 4349 aa10.06□□□□□ -0.8
USP4-212ENST00000486549 RAB14P61106 215 aa10.06□□□□□ -0.8
USP4-212ENST00000486549 TRAV8-6A0A0B4J262 113 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 TRBV10-1A0A0K0K1A3 114 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 NTF3P20783 257 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 RPL36AP83881 106 aaKnown RBP10.05□□□□□ -0.8
USP4-212ENST00000486549 TMEM241Q24JQ0 296 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 FAM74A3Q4VXF1 159 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 LELP1Q5T871 98 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 GTSF1Q8WW33 167 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 RPL36ALQ969Q0 106 aaKnown RBP10.05□□□□□ -0.8
USP4-212ENST00000486549 KIF25-AS1Q9Y6Z4 181 aa10.05□□□□□ -0.8
USP4-212ENST00000486549 A8MWL6 223 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 TRGC1P0CF51 173 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 EVI2AP22794 236 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 LINC00315P59091 139 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 TWIST1Q15672 202 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 ADIRFQ15847 76 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 SMDT1Q9H4I9 107 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 HECTD4Q9Y4D8 3996 aa10.04□□□□□ -0.8
USP4-212ENST00000486549 TRBV7-3A0A075B6L6 115 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 TRAV9-2A0A087WT02 112 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 IGHV3-38A0A0C4DH36 116 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 A0A1B0GVY2 172 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 DNAH10OSP0CZ25 163 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 RPL23P62829 140 aaKnown RBP10.03□□□□□ -0.8
USP4-212ENST00000486549 C15orf54Q8N8G6 183 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 NEXN-AS1Q8NBZ9 246 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 PGLYRP4Q96LB8 373 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 OSTCQ9NRP0 149 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 NAT8Q9UHE5 227 aa10.03□□□□□ -0.8
USP4-212ENST00000486549 BTF3P20290 206 aaKnown RBP10.02□□□□□ -0.81
USP4-212ENST00000486549 UBE2D3P61077 147 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 UBE2D2P62837 147 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 TNP2Q05952 138 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 CT83Q5H943 113 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 WDR73Q6P4I2 378 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 OR10G8Q8NGN5 311 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 ISOC2Q96AB3 205 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 CNFNQ9BYD5 112 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 DPH3P1Q9H4G8 78 aa10.02□□□□□ -0.81
USP4-212ENST00000486549 IGHV3-30P01768 117 aa10.01□□□□□ -0.81
USP4-212ENST00000486549 IGHV3-33P01772 117 aa10.01□□□□□ -0.81
USP4-212ENST00000486549 IGHV3-30-3P0DP02 117 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms