RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 JPT2Q9H910 190 aa10.94□□□□□ -0.66
UPF3A-208ENST00000484246 LINC00694P0DN24 101 aa10.93□□□□□ -0.66
UPF3A-208ENST00000484246 FAM231DQ6ZW35 169 aa10.93□□□□□ -0.66
UPF3A-208ENST00000484246 FER1L6-AS1Q8NA97 138 aa10.93□□□□□ -0.66
UPF3A-208ENST00000484246 NUDT10Q8NFP7 164 aa10.93□□□□□ -0.66
UPF3A-208ENST00000484246 NUDT11Q96G61 164 aa10.93□□□□□ -0.66
UPF3A-208ENST00000484246 SMIM7Q9BQ49 75 aa10.93□□□□□ -0.66
UPF3A-208ENST00000484246 IGLV2-18A0A075B6J9 118 aa10.92□□□□□ -0.66
UPF3A-208ENST00000484246 IGHV3-73A0A0B4J1V6 119 aa10.92□□□□□ -0.66
UPF3A-208ENST00000484246 LOC100131303A0A0U1RQF7 123 aa10.92□□□□□ -0.66
UPF3A-208ENST00000484246 A0A1W2PPQ1 181 aa10.92□□□□□ -0.66
UPF3A-208ENST00000484246 CTRLP40313 264 aa10.92□□□□□ -0.66
UPF3A-208ENST00000484246 LYPD5Q6UWN5 251 aa10.92□□□□□ -0.66
UPF3A-208ENST00000484246 RPP21Q9H633 154 aaKnown RBP10.92□□□□□ -0.66
UPF3A-208ENST00000484246 NBDYA0A0U1RRE5 68 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 F2Z2F3 143 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 CACNG7P62955 275 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 FAM74A3Q4VXF1 159 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 CT83Q5H943 113 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 TTC32Q5I0X7 151 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 SPANXN1Q5VSR9 72 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 Q6ZSN1 163 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 LINC01551Q86U37 167 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 CNFNQ9BYD5 112 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 Q9H8V8 135 aa10.91□□□□□ -0.66
UPF3A-208ENST00000484246 DNAH10Q8IVF4 4471 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 NACAE9PAV3 2078 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 ZNF727A8MUV8 499 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 C9JQL5 133 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 GZMBP10144 247 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 BTF3P20290 206 aaKnown RBP10.9□□□□□ -0.66
UPF3A-208ENST00000484246 PEA15Q15121 130 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 WDR73Q6P4I2 378 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 AP1S3Q96PC3 154 aa10.9□□□□□ -0.66
UPF3A-208ENST00000484246 RNASE7Q9H1E1 156 aaKnown RBP10.9□□□□□ -0.66
UPF3A-208ENST00000484246 A0A087WWL8 130 aa10.89□□□□□ -0.67
UPF3A-208ENST00000484246 TRBV10-1A0A0K0K1A3 114 aa10.89□□□□□ -0.67
UPF3A-208ENST00000484246 LORP23490 312 aaPredicted RBP10.89□□□□□ -0.67
UPF3A-208ENST00000484246 CEBPGP53567 150 aa10.89□□□□□ -0.67
UPF3A-208ENST00000484246 FAM74A4Q5TZK3 123 aa10.89□□□□□ -0.67
UPF3A-208ENST00000484246 LINC00336Q6ZUF6 198 aa10.89□□□□□ -0.67
UPF3A-208ENST00000484246 KIF25-AS1Q9Y6Z4 181 aa10.89□□□□□ -0.67
UPF3A-208ENST00000484246 M0R2N4 97 aa10.88□□□□□ -0.67
UPF3A-208ENST00000484246 RAB4BP61018 213 aa10.88□□□□□ -0.67
UPF3A-208ENST00000484246 C14orf178Q8N769 122 aaPredicted RBP10.88□□□□□ -0.67
UPF3A-208ENST00000484246 SIVA1O15304 175 aa10.87□□□□□ -0.67
UPF3A-208ENST00000484246 SRSF3P84103 164 aaKnown RBP10.87□□□□□ -0.67
UPF3A-208ENST00000484246 OR10G8Q8NGN5 311 aa10.87□□□□□ -0.67
UPF3A-208ENST00000484246 OSTCQ9NRP0 149 aa10.87□□□□□ -0.67
UPF3A-208ENST00000484246 DNAH2Q9P225 4427 aa10.87□□□□□ -0.67
UPF3A-208ENST00000484246 K7EP13 123 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 RTL8CO15255 209 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 GATCO43716 136 aaKnown RBP10.86□□□□□ -0.67
UPF3A-208ENST00000484246 LINC00315P59091 139 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 RAB14P61106 215 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 CLLU1Q5K131 121 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 LYZL1Q6UWQ5 148 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 GTSF1Q8WW33 167 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 TPPP3Q9BW30 176 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 KRTAP1-5Q9BYS1 174 aa10.86□□□□□ -0.67
UPF3A-208ENST00000484246 MUC21A0A0G2JKD1 596 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 MUC21A0A140T8X8 626 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 A8MWL6 223 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 DNAH10OSP0CZ25 163 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 FOXA3P55318 350 aaPredicted RBP10.85□□□□□ -0.67
UPF3A-208ENST00000484246 ERVFC1-1P60608 527 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 TMEM241Q24JQ0 296 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 SOHLH1Q5JUK2 328 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 C1orf134Q5TEV5 83 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 ATP6V0E2Q8NHE4 81 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 GTSF1LQ9H1H1 148 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 NAT8Q9UHE5 227 aa10.85□□□□□ -0.67
UPF3A-208ENST00000484246 FAM231BA6NCW3 169 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 GAGE12JA6NER3 117 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 TRGC1P0CF51 173 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 GAGE1Q13065 139 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 GAGE4Q13068 117 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 GAGE5Q13069 117 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 GAGE13Q4V321 117 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 LELP1Q5T871 98 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 ISOC2Q96AB3 205 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 GFRA4Q9GZZ7 299 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 Q9UF83 564 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 HERC2O95714 4834 aa10.84□□□□□ -0.67
UPF3A-208ENST00000484246 SMIM17P0DL12 118 aa10.83□□□□□ -0.68
UPF3A-208ENST00000484246 RPL23P62829 140 aaKnown RBP10.83□□□□□ -0.68
UPF3A-208ENST00000484246 IFITM2Q01629 132 aa10.83□□□□□ -0.68
UPF3A-208ENST00000484246 ZNF56Q15929 161 aa10.83□□□□□ -0.68
UPF3A-208ENST00000484246 WFDC10BQ8IUB3 73 aa10.83□□□□□ -0.68
UPF3A-208ENST00000484246 C6orf223Q8N319 242 aa10.83□□□□□ -0.68
UPF3A-208ENST00000484246 TSKUQ8WUA8 353 aa10.83□□□□□ -0.68
UPF3A-208ENST00000484246 MSRB1Q9NZV6 116 aa10.83□□□□□ -0.68
UPF3A-208ENST00000484246 FAT2Q9NYQ8 4349 aa10.82□□□□□ -0.68
UPF3A-208ENST00000484246 TRBV7-3A0A075B6L6 115 aa10.82□□□□□ -0.68
UPF3A-208ENST00000484246 NTF3P20783 257 aa10.82□□□□□ -0.68
UPF3A-208ENST00000484246 UBE2D3P61077 147 aa10.82□□□□□ -0.68
UPF3A-208ENST00000484246 UBE2D2P62837 147 aa10.82□□□□□ -0.68
UPF3A-208ENST00000484246 RPL36AP83881 106 aaKnown RBP10.82□□□□□ -0.68
UPF3A-208ENST00000484246 RPL36ALQ969Q0 106 aaKnown RBP10.82□□□□□ -0.68
UPF3A-208ENST00000484246 A0A087WWC5 75 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms