RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 DNAH14Q0VDD8 3507 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 DMXL1Q9Y485 3027 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 ARID1AO14497 2285 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 OTOGLQ3ZCN5 2332 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 EML6Q6ZMW3 1958 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 PHF3Q92576 2039 aaKnown RBP3.63□□□□□ -1.83
USP40-213ENST00000483216 TRAV8-2A0A0B4J237 113 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 TRAV8-4A0A0B4J246 113 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 IGHV1-69DA0A0B4J2H0 117 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 RBAKDNA6NC62 111 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 H3BT86 120 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 CNIH1O95406 144 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 P0DMU3 169 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 FAM231AP0DMU4 169 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 FAM231CP0DMU5 169 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 CCL3P10147 92 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 CCL4P13236 92 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 ORM2P19652 201 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 LEPP41159 167 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 PSMB2P49721 201 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 EBI3Q14213 229 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 SPINK9Q5DT21 86 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 TMEM170BQ5T4T1 132 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 C11orf71Q6IPW1 123 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 AMTNQ6UX39 209 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 PRNTQ86SH4 94 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 C15orf53Q8NAA6 179 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 SLC50A1Q9BRV3 221 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 MRPL20Q9BYC9 149 aaKnown RBP3.63□□□□□ -1.83
USP40-213ENST00000483216 DYNLRB1Q9NP97 96 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 PRO1854Q9UHT4 67 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 HHLA3Q9XRX5 114 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 KIAA1549Q9HCM3 1950 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 GVINP1Q7Z2Y8 2422 aa3.63□□□□□ -1.83
USP40-213ENST00000483216 GPR179Q6PRD1 2367 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 SHANK1Q9Y566 2161 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 TRBV19A0A075B6N1 114 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 IGHV3OR16-13A0A075B7E8 117 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 TRAV2A0A0B4J234 112 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 KRTAP4-16G5E9R7 235 aaPredicted RBP3.62□□□□□ -1.83
USP40-213ENST00000483216 UQCRQO14949 82 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 SNAI2O43623 268 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 SAA2P0DJI9 122 aaPredicted RBP3.62□□□□□ -1.83
USP40-213ENST00000483216 CXCL5P42830 114 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 FXYD2P54710 66 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 UBE2D3P61077 147 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 UBE2D2P62837 147 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 MEIG1Q5JSS6 88 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 TMEM78Q5T7P6 136 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 C10orf126Q8N4M7 172 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 LINC00311Q8N616 119 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 MDS2Q8NDY4 140 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 KLF14Q8TD94 323 aaPredicted RBP3.62□□□□□ -1.83
USP40-213ENST00000483216 NRGNQ92686 78 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 TIMD4Q96H15 378 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 TMEM141Q96I45 108 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 FOXC2Q99958 501 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 PROK2Q9HC23 129 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 SS18L2Q9UHA2 77 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 SIGLEC9Q9Y336 463 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 LENEPQ9Y5L5 61 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 F11RQ9Y624 299 aaKnown RBP3.62□□□□□ -1.83
USP40-213ENST00000483216 MED12Q93074 2177 aa3.62□□□□□ -1.83
USP40-213ENST00000483216 SPTBN4Q9H254 2564 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 NCOA6Q14686 2063 aaPredicted RBP3.61□□□□□ -1.83
USP40-213ENST00000483216 COL27A1Q8IZC6 1860 aaPredicted RBP3.61□□□□□ -1.83
USP40-213ENST00000483216 A0A0B4J2C4 111 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 LOC389332A0A1B0GUA5 103 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 A6NDX4 124 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 M0R2P5 195 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 M0R381 172 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 SLC25A20O43772 301 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 ARMS2P0C7Q2 107 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 PYYP10082 97 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 DEFA4P12838 97 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 UBE2D1P51668 147 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 EDDM3AQ14507 147 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 MRPL51Q4U2R6 128 aaKnown RBP3.61□□□□□ -1.83
USP40-213ENST00000483216 LYZL1Q6UWQ5 148 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 Q6ZT83 130 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 ZNF833PQ6ZTB9 187 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 GOLT1AQ6ZVE7 132 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 MDP1Q86V88 176 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 PCP2Q8IVA1 136 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 SMIM20Q8N5G0 67 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 ANKRD29Q8N6D5 301 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 Q8N9W7 124 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 RPUSD1Q9UJJ7 312 aaKnown RBP3.61□□□□□ -1.83
USP40-213ENST00000483216 DCHS1Q96JQ0 3298 aa3.61□□□□□ -1.83
USP40-213ENST00000483216 TRBV7-3A0A075B6L6 115 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 IGKV1OR2-108A0A075B7D4 117 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 IGHV3OR15-7A0A075B7D8 119 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 TRBV7-7A0A0K0K1E9 115 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 TRBV10-2A0A0K0K1G8 114 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 DEFB108AA8MXU0 73 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 H3BMM0 161 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 H3BVH4 76 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 ATOX1O00244 68 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 RS1O15537 224 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 NCR2O95944 276 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms