RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 A0A087WWL8 130 aa9.99□□□□□ -0.81
LIMS3-204ENST00000482065 M0R381 172 aa9.99□□□□□ -0.81
LIMS3-204ENST00000482065 TPT1P13693 172 aaKnown RBP9.99□□□□□ -0.81
LIMS3-204ENST00000482065 CDPF1Q6NVV7 123 aa9.99□□□□□ -0.81
LIMS3-204ENST00000482065 TMUB2Q71RG4 321 aa9.99□□□□□ -0.81
LIMS3-204ENST00000482065 RHODO00212 210 aa9.98□□□□□ -0.81
LIMS3-204ENST00000482065 PFDN1O60925 122 aa9.98□□□□□ -0.81
LIMS3-204ENST00000482065 H2AFB1P0C5Y9 115 aa9.98□□□□□ -0.81
LIMS3-204ENST00000482065 RPL19P84098 196 aaKnown RBP9.98□□□□□ -0.81
LIMS3-204ENST00000482065 Q8N1X5 172 aa9.98□□□□□ -0.81
LIMS3-204ENST00000482065 SFRP2Q96HF1 295 aa9.98□□□□□ -0.81
LIMS3-204ENST00000482065 PSCAO43653 123 aa9.97□□□□□ -0.81
LIMS3-204ENST00000482065 KRTAP10-1P60331 282 aa9.97□□□□□ -0.81
LIMS3-204ENST00000482065 EIF5AP63241 154 aaKnown RBP9.97□□□□□ -0.81
LIMS3-204ENST00000482065 BAGE2Q86Y30 109 aa9.97□□□□□ -0.81
LIMS3-204ENST00000482065 ZFP82Q8N141 532 aa9.97□□□□□ -0.81
LIMS3-204ENST00000482065 LRCOL1A6NCL2 159 aa9.96□□□□□ -0.82
LIMS3-204ENST00000482065 S100A9P06702 114 aaKnown RBP9.96□□□□□ -0.82
LIMS3-204ENST00000482065 CCL20P78556 96 aa9.96□□□□□ -0.82
LIMS3-204ENST00000482065 MLST8Q9BVC4 326 aa9.96□□□□□ -0.82
LIMS3-204ENST00000482065 BOLA1Q9Y3E2 137 aa9.96□□□□□ -0.82
LIMS3-204ENST00000482065 PRR27Q6MZM9 219 aa9.95□□□□□ -0.82
LIMS3-204ENST00000482065 FAT1Q14517 4588 aa9.95□□□□□ -0.82
LIMS3-204ENST00000482065 XGP55808 180 aa9.94□□□□□ -0.82
LIMS3-204ENST00000482065 DAZ4Q86SG3 579 aaKnown RBP9.94□□□□□ -0.82
LIMS3-204ENST00000482065 OR10AG1Q8NH19 301 aa9.94□□□□□ -0.82
LIMS3-204ENST00000482065 DAZ3Q9NR90 486 aaKnown RBP9.94□□□□□ -0.82
LIMS3-204ENST00000482065 GNG13Q9P2W3 67 aa9.94□□□□□ -0.82
LIMS3-204ENST00000482065 MUC21A0A0G2JKD1 596 aa9.93□□□□□ -0.82
LIMS3-204ENST00000482065 MUC21A0A140T8X8 626 aa9.93□□□□□ -0.82
LIMS3-204ENST00000482065 RPL35P42766 123 aaKnown RBP9.93□□□□□ -0.82
LIMS3-204ENST00000482065 LAGE3Q14657 143 aa9.93□□□□□ -0.82
LIMS3-204ENST00000482065 DERL1Q9BUN8 251 aa9.93□□□□□ -0.82
LIMS3-204ENST00000482065 A0A087WWC5 75 aa9.92□□□□□ -0.82
LIMS3-204ENST00000482065 CXCL1P09341 107 aa9.92□□□□□ -0.82
LIMS3-204ENST00000482065 GCSHP23434 173 aa9.92□□□□□ -0.82
LIMS3-204ENST00000482065 MANBALQ9NQG1 85 aa9.92□□□□□ -0.82
LIMS3-204ENST00000482065 IGLV5-52A0A0A0MRZ9 124 aa9.91□□□□□ -0.82
LIMS3-204ENST00000482065 TRAV1-1A0A0B4J248 108 aa9.91□□□□□ -0.82
LIMS3-204ENST00000482065 SNAI2O43623 268 aa9.91□□□□□ -0.82
LIMS3-204ENST00000482065 SSTP61278 116 aa9.91□□□□□ -0.82
LIMS3-204ENST00000482065 WFDC2Q14508 124 aa9.91□□□□□ -0.82
LIMS3-204ENST00000482065 Q8N814 137 aa9.91□□□□□ -0.82
LIMS3-204ENST00000482065 C11orf52Q96A22 123 aa9.91□□□□□ -0.82
LIMS3-204ENST00000482065 TRBV10-1A0A0K0K1A3 114 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 SULT1A2P50226 295 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 RAB5CP51148 216 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 UBE2D3P61077 147 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 UBE2D2P62837 147 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 RPL36AP83881 106 aaKnown RBP9.9□□□□□ -0.82
LIMS3-204ENST00000482065 ZNF56Q15929 161 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 CENPWQ5EE01 88 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 NIT1Q86X76 327 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 TCTE3Q8IZS6 198 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 RPL36ALQ969Q0 106 aaKnown RBP9.9□□□□□ -0.82
LIMS3-204ENST00000482065 SSBP4Q9BWG4 385 aaPredicted RBP9.9□□□□□ -0.82
LIMS3-204ENST00000482065 TM2D2Q9BX73 214 aa9.9□□□□□ -0.82
LIMS3-204ENST00000482065 DNAH8Q96JB1 4490 aa9.89□□□□□ -0.83
LIMS3-204ENST00000482065 TRBV7-3A0A075B6L6 115 aa9.89□□□□□ -0.83
LIMS3-204ENST00000482065 TRAV8-3A0A0A6YYJ7 113 aa9.89□□□□□ -0.83
LIMS3-204ENST00000482065 OR5AL1P0C617 328 aa9.89□□□□□ -0.83
LIMS3-204ENST00000482065 HAMPP81172 84 aa9.89□□□□□ -0.83
LIMS3-204ENST00000482065 SPANXN1Q5VSR9 72 aa9.89□□□□□ -0.83
LIMS3-204ENST00000482065 EIF5AL1Q6IS14 154 aaKnown RBP9.89□□□□□ -0.83
LIMS3-204ENST00000482065 NTN5Q8WTR8 489 aaPredicted RBP9.89□□□□□ -0.83
LIMS3-204ENST00000482065 DNAJC30Q96LL9 226 aa9.89□□□□□ -0.83
LIMS3-204ENST00000482065 RAB19A4D1S5 217 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 EPM2AB3EWF7 344 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 LECT2O14960 151 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 IGLV2-8P01709 118 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 GZMBP10144 247 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 RAB4BP61018 213 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 NEXN-AS1Q8NBZ9 246 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 OR10G8Q8NGN5 311 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 URGCP-MRPS24S4R325 110 aa9.88□□□□□ -0.83
LIMS3-204ENST00000482065 RBFOX3A6NFN3 312 aa9.87□□□□□ -0.83
LIMS3-204ENST00000482065 TEX46H3BTG2 121 aa9.87□□□□□ -0.83
LIMS3-204ENST00000482065 TOR2AQ5JU69 321 aa9.87□□□□□ -0.83
LIMS3-204ENST00000482065 KLK12Q9UKR0 248 aa9.87□□□□□ -0.83
LIMS3-204ENST00000482065 C1QBP02746 253 aa9.86□□□□□ -0.83
LIMS3-204ENST00000482065 MEF2BQ02080 365 aaPredicted RBP9.86□□□□□ -0.83
LIMS3-204ENST00000482065 SLC51BQ86UW2 128 aa9.86□□□□□ -0.83
LIMS3-204ENST00000482065 A0A087WX48 190 aa9.85□□□□□ -0.83
LIMS3-204ENST00000482065 F5H697 171 aa9.85□□□□□ -0.83
LIMS3-204ENST00000482065 SMR3BP02814 79 aaPredicted RBP9.85□□□□□ -0.83
LIMS3-204ENST00000482065 OR2D3Q8NGH3 330 aa9.85□□□□□ -0.83
LIMS3-204ENST00000482065 BAALCQ8WXS3 180 aa9.85□□□□□ -0.83
LIMS3-204ENST00000482065 UBE2WQ96B02 151 aa9.85□□□□□ -0.83
LIMS3-204ENST00000482065 TPPP3Q9BW30 176 aa9.85□□□□□ -0.83
LIMS3-204ENST00000482065 KIF25-AS1Q9Y6Z4 181 aa9.85□□□□□ -0.83
LIMS3-204ENST00000482065 TRBV20OR9-2A0A075B6H5 130 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.84□□□□□ -0.83
LIMS3-204ENST00000482065 IGKV2D-24A0A075B6R9 120 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 TRBV6-8A0A0A6YYG3 113 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 C19orf71A6NCJ1 209 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 IFNA1P01562 189 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 IGLC6P0CF74 106 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 BCL2P10415 239 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 GNG4P50150 75 aa9.84□□□□□ -0.83
LIMS3-204ENST00000482065 Q5VSD8 79 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 124.8 ms