RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 SFRP2Q96HF1 295 aa11.91□□□□□ -0.5
COL9A3-212ENST00000481800 A0A087WTM6 91 aa11.9□□□□□ -0.5
COL9A3-212ENST00000481800 A0A087WWL8 130 aa11.9□□□□□ -0.5
COL9A3-212ENST00000481800 PSCAO43653 123 aa11.9□□□□□ -0.5
COL9A3-212ENST00000481800 TCTE3Q8IZS6 198 aa11.9□□□□□ -0.5
COL9A3-212ENST00000481800 TRAV1-1A0A0B4J248 108 aa11.89□□□□□ -0.51
COL9A3-212ENST00000481800 IBA57-AS1B1ANH7 110 aa11.89□□□□□ -0.51
COL9A3-212ENST00000481800 CCL20P78556 96 aa11.89□□□□□ -0.51
COL9A3-212ENST00000481800 PRR27Q6MZM9 219 aa11.89□□□□□ -0.51
COL9A3-212ENST00000481800 MLST8Q9BVC4 326 aa11.89□□□□□ -0.51
COL9A3-212ENST00000481800 A0A087WWC5 75 aa11.88□□□□□ -0.51
COL9A3-212ENST00000481800 RPL35P42766 123 aaKnown RBP11.88□□□□□ -0.51
COL9A3-212ENST00000481800 RPL19P84098 196 aaKnown RBP11.88□□□□□ -0.51
COL9A3-212ENST00000481800 CDPF1Q6NVV7 123 aa11.88□□□□□ -0.51
COL9A3-212ENST00000481800 Q9HAA7 133 aa11.88□□□□□ -0.51
COL9A3-212ENST00000481800 CXCL1P09341 107 aa11.87□□□□□ -0.51
COL9A3-212ENST00000481800 LINC00694P0DN24 101 aa11.87□□□□□ -0.51
COL9A3-212ENST00000481800 SULT1A2P50226 295 aa11.87□□□□□ -0.51
COL9A3-212ENST00000481800 MAPKAPK5-AS1Q8N8E1 139 aa11.87□□□□□ -0.51
COL9A3-212ENST00000481800 Q9UF83 564 aa11.87□□□□□ -0.51
COL9A3-212ENST00000481800 RYR1P21817 5038 aa11.86□□□□□ -0.51
COL9A3-212ENST00000481800 SLC51BQ86UW2 128 aa11.86□□□□□ -0.51
COL9A3-212ENST00000481800 C11orf52Q96A22 123 aa11.86□□□□□ -0.51
COL9A3-212ENST00000481800 IFNA1P01562 189 aa11.85□□□□□ -0.51
COL9A3-212ENST00000481800 C1QBP02746 253 aa11.85□□□□□ -0.51
COL9A3-212ENST00000481800 FUSP35637 526 aaKnown RBP eCLIP11.85□□□□□ -0.51
COL9A3-212ENST00000481800 RPL36AP83881 106 aaKnown RBP11.85□□□□□ -0.51
COL9A3-212ENST00000481800 SPANXN1Q5VSR9 72 aa11.85□□□□□ -0.51
COL9A3-212ENST00000481800 RPL36ALQ969Q0 106 aaKnown RBP11.85□□□□□ -0.51
COL9A3-212ENST00000481800 LRP1BQ9NZR2 4599 aa11.84□□□□□ -0.51
COL9A3-212ENST00000481800 TRBV10-1A0A0K0K1A3 114 aa11.84□□□□□ -0.51
COL9A3-212ENST00000481800 Q6ZNX1 250 aa11.84□□□□□ -0.51
COL9A3-212ENST00000481800 OR10AG1Q8NH19 301 aa11.84□□□□□ -0.51
COL9A3-212ENST00000481800 DAZAP1Q96EP5 407 aaKnown RBP11.84□□□□□ -0.51
COL9A3-212ENST00000481800 DERL1Q9BUN8 251 aa11.84□□□□□ -0.51
COL9A3-212ENST00000481800 PDE6DO43924 150 aa11.83□□□□□ -0.52
COL9A3-212ENST00000481800 MEF2BQ02080 365 aaPredicted RBP11.83□□□□□ -0.52
COL9A3-212ENST00000481800 LAGE3Q14657 143 aa11.83□□□□□ -0.52
COL9A3-212ENST00000481800 ZNF56Q15929 161 aa11.83□□□□□ -0.52
COL9A3-212ENST00000481800 CENPWQ5EE01 88 aa11.83□□□□□ -0.52
COL9A3-212ENST00000481800 TM2D2Q9BX73 214 aa11.83□□□□□ -0.52
COL9A3-212ENST00000481800 URGCP-MRPS24S4R325 110 aa11.83□□□□□ -0.52
COL9A3-212ENST00000481800 PCLOQ9Y6V0 5065 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 MUC21A0A0G2JKD1 596 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 MUC21A0A140T8X8 626 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 SNAI2O43623 268 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 OR5AL1P0C617 328 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 GNG4P50150 75 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 RAB4BP61018 213 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 SSTP61278 116 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 TOR2AQ5JU69 321 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 AKAP14Q86UN6 197 aa11.82□□□□□ -0.52
COL9A3-212ENST00000481800 SSBP4Q9BWG4 385 aaPredicted RBP11.82□□□□□ -0.52
COL9A3-212ENST00000481800 TRBV7-3A0A075B6L6 115 aa11.81□□□□□ -0.52
COL9A3-212ENST00000481800 TRAV8-3A0A0A6YYJ7 113 aa11.81□□□□□ -0.52
COL9A3-212ENST00000481800 MED9Q9NWA0 146 aa11.81□□□□□ -0.52
COL9A3-212ENST00000481800 hCG_2014768A0A024R1R8 64 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 RAB19A4D1S5 217 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 F5H697 171 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 SMIM17P0DL12 118 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 BCL2P10415 239 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 RPS20P60866 119 aaKnown RBP11.8□□□□□ -0.52
COL9A3-212ENST00000481800 KCNIP4Q6PIL6 250 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 DAZ4Q86SG3 579 aaKnown RBP11.8□□□□□ -0.52
COL9A3-212ENST00000481800 Q8N3U1 123 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.8□□□□□ -0.52
COL9A3-212ENST00000481800 SMIM12Q96EX1 92 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 TPPP3Q9BW30 176 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 KRTAP4-5Q9BYR2 181 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 DAZ3Q9NR90 486 aaKnown RBP11.8□□□□□ -0.52
COL9A3-212ENST00000481800 VAX2Q9UIW0 290 aa11.8□□□□□ -0.52
COL9A3-212ENST00000481800 LRCOL1A6NCL2 159 aa11.79□□□□□ -0.52
COL9A3-212ENST00000481800 TAGLN2P37802 199 aaKnown RBP11.79□□□□□ -0.52
COL9A3-212ENST00000481800 UBE2D3P61077 147 aa11.79□□□□□ -0.52
COL9A3-212ENST00000481800 UBE2D2P62837 147 aa11.79□□□□□ -0.52
COL9A3-212ENST00000481800 Q8N1X5 172 aa11.79□□□□□ -0.52
COL9A3-212ENST00000481800 OR2D3Q8NGH3 330 aa11.79□□□□□ -0.52
COL9A3-212ENST00000481800 BIN3Q9NQY0 253 aa11.79□□□□□ -0.52
COL9A3-212ENST00000481800 A0A087WX48 190 aa11.78□□□□□ -0.52
COL9A3-212ENST00000481800 XKRY2A2RUG3 117 aa11.78□□□□□ -0.52
COL9A3-212ENST00000481800 GCSHP23434 173 aa11.78□□□□□ -0.52
COL9A3-212ENST00000481800 OR10G8Q8NGN5 311 aa11.78□□□□□ -0.52
COL9A3-212ENST00000481800 NTN5Q8WTR8 489 aaPredicted RBP11.78□□□□□ -0.52
COL9A3-212ENST00000481800 AP1S3Q96PC3 154 aa11.78□□□□□ -0.52
COL9A3-212ENST00000481800 IGLV5-52A0A0A0MRZ9 124 aa11.77□□□□□ -0.53
COL9A3-212ENST00000481800 IGLV2-8P01709 118 aa11.77□□□□□ -0.53
COL9A3-212ENST00000481800 P01737 135 aa11.77□□□□□ -0.53
COL9A3-212ENST00000481800 NIT1Q86X76 327 aa11.77□□□□□ -0.53
COL9A3-212ENST00000481800 FER1L6-AS1Q8NA97 138 aa11.77□□□□□ -0.53
COL9A3-212ENST00000481800 HSPG2P98160 4391 aa11.77□□□□□ -0.53
COL9A3-212ENST00000481800 DNAH5Q8TE73 4624 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 GZMBP10144 247 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 KRTAP10-1P60331 282 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 ELOBQ15370 118 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 C9orf62Q8N4C0 152 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 Q8N814 137 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 NEXN-AS1Q8NBZ9 246 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 RMI2Q96E14 147 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 COX11Q9Y6N1 276 aa11.76□□□□□ -0.53
COL9A3-212ENST00000481800 C19orf71A6NCJ1 209 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms