RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 ATP6V0CP27449 155 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 FHITP49789 147 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 GNG5P63218 68 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 IFITM3Q01628 133 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 ELOBQ15370 118 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 C14orf177Q52M58 125 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 ZNF506Q5JVG8 444 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 DNLZQ5SXM8 178 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 AKR1C8PQ5T2L2 129 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 FAM162BQ5T6X4 162 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 Q5VSD8 79 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 KCNIP4Q6PIL6 250 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 COX8CQ7Z4L0 72 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 SLC25A29Q8N8R3 303 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.79□□□□□ -1.96
VPS13D-208ENST00000481484 OR11H4Q8NGC9 324 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 ATP6V0E2Q8NHE4 81 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 STOML3Q8TAV4 291 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 FMC1Q96HJ9 113 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 MED28Q9H204 178 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 PARLQ9H300 379 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 PSG8Q9UQ74 426 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 ZFP30Q9Y2G7 519 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 TMA7Q9Y2S6 64 aaKnown RBP2.79□□□□□ -1.96
VPS13D-208ENST00000481484 ALG5Q9Y673 324 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 URGCP-MRPS24S4R325 110 aa2.79□□□□□ -1.96
VPS13D-208ENST00000481484 DNAH8Q96JB1 4490 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 FXYD6-FXYD2A0A087WZ82 144 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 MAP1LC3B2A6NCE7 125 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 FABP5P3A8MUU1 101 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 IFNA7P01567 189 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 IGLV2-11P01706 119 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 S100A9P06702 114 aaKnown RBP2.78□□□□□ -1.96
VPS13D-208ENST00000481484 UBE2G1P62253 170 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 ZNF345Q14585 488 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 TMEM97Q5BJF2 176 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 Q6ZQT7 251 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 ZFP82Q8N141 532 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 Q8N814 137 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 TVP23CQ96ET8 276 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 MAP1LC3BQ9GZQ8 125 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 WFDC1Q9HC57 220 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 EPDR1Q9UM22 224 aa2.78□□□□□ -1.96
VPS13D-208ENST00000481484 LOC100131303A0A0U1RQF7 123 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 LRCOL1A6NCL2 159 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 RNF222A6NCQ9 220 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 B4DEV8 164 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 UMAD1C9J7I0 102 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 H3BVH4 76 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 GNRH2O43555 120 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 PFDN1O60925 122 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 LTAP01374 205 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 INAFM2P0DMQ5 153 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 RNASE3P12724 160 aaKnown RBP2.77□□□□□ -1.97
VPS13D-208ENST00000481484 TPT1P13693 172 aaKnown RBP2.77□□□□□ -1.97
VPS13D-208ENST00000481484 AKR1C3P42330 323 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 EIF5AP63241 154 aaKnown RBP2.77□□□□□ -1.97
VPS13D-208ENST00000481484 RPL36AP83881 106 aaKnown RBP2.77□□□□□ -1.97
VPS13D-208ENST00000481484 Q0VG73 95 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 LGALSLQ3ZCW2 172 aaPredicted RBP2.77□□□□□ -1.97
VPS13D-208ENST00000481484 DPPA3Q6W0C5 159 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 Q6ZSA8 131 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 PRNTQ86SH4 94 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 OR2T35Q8NGX2 323 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 RPL36ALQ969Q0 106 aaKnown RBP2.77□□□□□ -1.97
VPS13D-208ENST00000481484 LINC00479Q96M42 142 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 Q9HAA7 133 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 PHLDA3Q9Y5J5 127 aa2.77□□□□□ -1.97
VPS13D-208ENST00000481484 A0A087WX48 190 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 FAM74A7A6NL05 159 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 HMGB3O15347 200 aaKnown RBP2.76□□□□□ -1.97
VPS13D-208ENST00000481484 CRPP02741 224 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 ZNF80P51504 273 aaPredicted RBP2.76□□□□□ -1.97
VPS13D-208ENST00000481484 XGP55808 180 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 KRTAP10-1P60331 282 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 ZNF674Q2M3X9 581 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 RGS21Q2M5E4 152 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 RPL7L1Q6DKI1 246 aaKnown RBP2.76□□□□□ -1.97
VPS13D-208ENST00000481484 UFSP1Q6NVU6 142 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 ATRAIDQ6UW56 229 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 Q8N976 141 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 OR10G8Q8NGN5 311 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 SMIM12Q96EX1 92 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 AP1S3Q96PC3 154 aa2.76□□□□□ -1.97
VPS13D-208ENST00000481484 TRBV7-3A0A075B6L6 115 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 IGKV3D-20A0A0C4DH25 116 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 GAGE12JA6NER3 117 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 RBFOX3A6NFN3 312 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 PGPEP1LA6NFU8 196 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 KRBOX1C9JBD0 128 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 TEX46H3BTG2 121 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 H7C1H1 209 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 SH2D1AO60880 128 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 IGHV3-30P01768 117 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 IGHV3-33P01772 117 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 OR5AL1P0C617 328 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 IGHV3-30-3P0DP02 117 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 IGHV3-30-5P0DP03 117 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 UBE2G2P60604 165 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 RAB4BP61018 213 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms