RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 C14orf178Q8N769 122 aaPredicted RBP10.64□□□□□ -0.71
HMGA1-206ENST00000478214 DAZAP1Q96EP5 407 aaKnown RBP10.64□□□□□ -0.71
HMGA1-206ENST00000478214 SSBP4Q9BWG4 385 aaPredicted RBP10.64□□□□□ -0.71
HMGA1-206ENST00000478214 Q9UF83 564 aa10.64□□□□□ -0.71
HMGA1-206ENST00000478214 DNAH11Q96DT5 4516 aa10.63□□□□□ -0.71
HMGA1-206ENST00000478214 OR5AL1P0C617 328 aa10.63□□□□□ -0.71
HMGA1-206ENST00000478214 GZMBP10144 247 aa10.63□□□□□ -0.71
HMGA1-206ENST00000478214 TIRAPP58753 221 aa10.63□□□□□ -0.71
HMGA1-206ENST00000478214 OR2D3Q8NGH3 330 aa10.63□□□□□ -0.71
HMGA1-206ENST00000478214 GAGE12JA6NER3 117 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 SSTP61278 116 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 TNP2Q05952 138 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 GAGE1Q13065 139 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 GAGE4Q13068 117 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 GAGE5Q13069 117 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 GAGE13Q4V321 117 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 TOR2AQ5JU69 321 aa10.62□□□□□ -0.71
HMGA1-206ENST00000478214 TMEM250H0YL14 139 aa10.61□□□□□ -0.71
HMGA1-206ENST00000478214 P01737 135 aa10.61□□□□□ -0.71
HMGA1-206ENST00000478214 SPANXN1Q5VSR9 72 aa10.61□□□□□ -0.71
HMGA1-206ENST00000478214 ATP6V0E2Q8NHE4 81 aa10.61□□□□□ -0.71
HMGA1-206ENST00000478214 LY96Q9Y6Y9 160 aa10.61□□□□□ -0.71
HMGA1-206ENST00000478214 DYNC1H1Q14204 4646 aaKnown RBP10.6□□□□□ -0.71
HMGA1-206ENST00000478214 IGLC6P0CF74 106 aa10.6□□□□□ -0.71
HMGA1-206ENST00000478214 LINC00694P0DN24 101 aa10.6□□□□□ -0.71
HMGA1-206ENST00000478214 LINC00315P59091 139 aa10.6□□□□□ -0.71
HMGA1-206ENST00000478214 RPS20P60866 119 aaKnown RBP10.6□□□□□ -0.71
HMGA1-206ENST00000478214 OCC1Q8TAD7 63 aa10.6□□□□□ -0.71
HMGA1-206ENST00000478214 TPPP3Q9BW30 176 aa10.6□□□□□ -0.71
HMGA1-206ENST00000478214 GTSF1LQ9H1H1 148 aa10.6□□□□□ -0.71
HMGA1-206ENST00000478214 BIN3Q9NQY0 253 aa10.6□□□□□ -0.71
HMGA1-206ENST00000478214 K7EN84 100 aa10.59□□□□□ -0.71
HMGA1-206ENST00000478214 DNAH10OSP0CZ25 163 aa10.59□□□□□ -0.71
HMGA1-206ENST00000478214 CEBPGP53567 150 aa10.59□□□□□ -0.71
HMGA1-206ENST00000478214 FER1L6-AS1Q8NA97 138 aa10.59□□□□□ -0.71
HMGA1-206ENST00000478214 NUDT10Q8NFP7 164 aa10.59□□□□□ -0.71
HMGA1-206ENST00000478214 NUDT11Q96G61 164 aa10.59□□□□□ -0.71
HMGA1-206ENST00000478214 FAM210AQ96ND0 272 aa10.59□□□□□ -0.71
HMGA1-206ENST00000478214 EIF5A2Q9GZV4 153 aaKnown RBP10.59□□□□□ -0.71
HMGA1-206ENST00000478214 BTF3P20290 206 aaKnown RBP10.58□□□□□ -0.72
HMGA1-206ENST00000478214 OR10J3Q5JRS4 329 aa10.58□□□□□ -0.72
HMGA1-206ENST00000478214 LELP1Q5T871 98 aa10.58□□□□□ -0.72
HMGA1-206ENST00000478214 RNASE7Q9H1E1 156 aaKnown RBP10.58□□□□□ -0.72
HMGA1-206ENST00000478214 TNFRSF18Q9Y5U5 241 aa10.58□□□□□ -0.72
HMGA1-206ENST00000478214 TRAV9-2A0A087WT02 112 aa10.57□□□□□ -0.72
HMGA1-206ENST00000478214 TRAV8-6A0A0B4J262 113 aa10.57□□□□□ -0.72
HMGA1-206ENST00000478214 IGHV3-38A0A0C4DH36 116 aa10.57□□□□□ -0.72
HMGA1-206ENST00000478214 XKRY2A2RUG3 117 aa10.57□□□□□ -0.72
HMGA1-206ENST00000478214 EVI2AP22794 236 aa10.57□□□□□ -0.72
HMGA1-206ENST00000478214 ZNF56Q15929 161 aa10.57□□□□□ -0.72
HMGA1-206ENST00000478214 TEX261Q6UWH6 196 aa10.57□□□□□ -0.72
HMGA1-206ENST00000478214 RAB4BP61018 213 aa10.56□□□□□ -0.72
HMGA1-206ENST00000478214 Q6ZRN7 208 aaPredicted RBP10.56□□□□□ -0.72
HMGA1-206ENST00000478214 AP1S3Q96PC3 154 aa10.56□□□□□ -0.72
HMGA1-206ENST00000478214 MSRB1Q9NZV6 116 aa10.56□□□□□ -0.72
HMGA1-206ENST00000478214 KIF25-AS1Q9Y6Z4 181 aa10.56□□□□□ -0.72
HMGA1-206ENST00000478214 TRBV10-1A0A0K0K1A3 114 aa10.55□□□□□ -0.72
HMGA1-206ENST00000478214 SRP19P09132 144 aaKnown RBP10.55□□□□□ -0.72
HMGA1-206ENST00000478214 LINC01556Q5JQF7 62 aa10.55□□□□□ -0.72
HMGA1-206ENST00000478214 LYZL1Q6UWQ5 148 aa10.55□□□□□ -0.72
HMGA1-206ENST00000478214 RPP21Q9H633 154 aaKnown RBP10.55□□□□□ -0.72
HMGA1-206ENST00000478214 F2Z2F3 143 aa10.54□□□□□ -0.72
HMGA1-206ENST00000478214 F5H697 171 aa10.54□□□□□ -0.72
HMGA1-206ENST00000478214 K7EP13 123 aa10.54□□□□□ -0.72
HMGA1-206ENST00000478214 NDUFS6O75380 124 aaKnown RBP10.54□□□□□ -0.72
HMGA1-206ENST00000478214 SMIM17P0DL12 118 aa10.54□□□□□ -0.72
HMGA1-206ENST00000478214 CACNG7P62955 275 aa10.54□□□□□ -0.72
HMGA1-206ENST00000478214 RPL36AP83881 106 aaKnown RBP10.54□□□□□ -0.72
HMGA1-206ENST00000478214 RPL36ALQ969Q0 106 aaKnown RBP10.54□□□□□ -0.72
HMGA1-206ENST00000478214 SMIM7Q9BQ49 75 aa10.54□□□□□ -0.72
HMGA1-206ENST00000478214 TRBV7-3A0A075B6L6 115 aa10.53□□□□□ -0.72
HMGA1-206ENST00000478214 C10orf126Q8N4M7 172 aa10.53□□□□□ -0.72
HMGA1-206ENST00000478214 NEXN-AS1Q8NBZ9 246 aa10.53□□□□□ -0.72
HMGA1-206ENST00000478214 OR10G8Q8NGN5 311 aa10.53□□□□□ -0.72
HMGA1-206ENST00000478214 A0A087WWC5 75 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 GATCO43716 136 aaKnown RBP10.52□□□□□ -0.73
HMGA1-206ENST00000478214 IGHV3-30P01768 117 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 IGHV3-33P01772 117 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 IGHV3-30-3P0DP02 117 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 IGHV3-30-5P0DP03 117 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 CTRLP40313 264 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 UBE2D3P61077 147 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 UBE2D2P62837 147 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 NFE4Q86UQ8 179 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 Q8N3U1 123 aa10.52□□□□□ -0.73
HMGA1-206ENST00000478214 ZNF727A8MUV8 499 aa10.51□□□□□ -0.73
HMGA1-206ENST00000478214 MGPP08493 103 aa10.51□□□□□ -0.73
HMGA1-206ENST00000478214 NTF3P20783 257 aa10.51□□□□□ -0.73
HMGA1-206ENST00000478214 FAM231DQ6ZW35 169 aa10.51□□□□□ -0.73
HMGA1-206ENST00000478214 LINC01551Q86U37 167 aa10.51□□□□□ -0.73
HMGA1-206ENST00000478214 C9JQL5 133 aa10.5□□□□□ -0.73
HMGA1-206ENST00000478214 ERVFC1-1P60608 527 aa10.5□□□□□ -0.73
HMGA1-206ENST00000478214 SRSF3P84103 164 aaKnown RBP10.5□□□□□ -0.73
HMGA1-206ENST00000478214 WDR73Q6P4I2 378 aa10.5□□□□□ -0.73
HMGA1-206ENST00000478214 GTSF1Q8WW33 167 aa10.5□□□□□ -0.73
HMGA1-206ENST00000478214 KIAA1109Q2LD37 5005 aa10.49□□□□□ -0.73
HMGA1-206ENST00000478214 IBA57-AS1B1ANH7 110 aa10.49□□□□□ -0.73
HMGA1-206ENST00000478214 TRGC1P0CF51 173 aa10.49□□□□□ -0.73
HMGA1-206ENST00000478214 CNFNQ9BYD5 112 aa10.49□□□□□ -0.73
HMGA1-206ENST00000478214 LRP1BQ9NZR2 4599 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms