RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 KIR2DL4Q99706 377 aa13.54□□□□□ -0.24
CCM2-209ENST00000477605 MED13LQ71F56 2210 aa13.53□□□□□ -0.24
CCM2-209ENST00000477605 IGKV3-7A0A075B6H7 116 aa13.53□□□□□ -0.24
CCM2-209ENST00000477605 TMEM238LA0A1B0GVL6 79 aa13.53□□□□□ -0.24
CCM2-209ENST00000477605 IGIPA6NJ69 53 aa13.53□□□□□ -0.24
CCM2-209ENST00000477605 A6NJY4 79 aa13.53□□□□□ -0.24
CCM2-209ENST00000477605 ATP5J2P56134 94 aa13.53□□□□□ -0.24
CCM2-209ENST00000477605 TIMM17AQ99595 171 aa13.53□□□□□ -0.24
CCM2-209ENST00000477605 IGHV4-30-2A0A087WSY4 118 aa13.52□□□□□ -0.24
CCM2-209ENST00000477605 B4DSR2 109 aa13.52□□□□□ -0.24
CCM2-209ENST00000477605 LGALS9O00182 355 aa13.52□□□□□ -0.24
CCM2-209ENST00000477605 HERVK_113P61574 105 aa13.52□□□□□ -0.24
CCM2-209ENST00000477605 ZFP2Q6ZN57 461 aa13.52□□□□□ -0.24
CCM2-209ENST00000477605 Q6ZS46 218 aa13.52□□□□□ -0.24
CCM2-209ENST00000477605 PSMB8P28062 276 aa13.52□□□□□ -0.25
CCM2-209ENST00000477605 RIPPLY3P57055 190 aa13.52□□□□□ -0.25
CCM2-209ENST00000477605 SCGB2A2Q13296 93 aa13.52□□□□□ -0.25
CCM2-209ENST00000477605 PMVKQ15126 192 aa13.52□□□□□ -0.25
CCM2-209ENST00000477605 SUMO4Q6EEV6 95 aa13.52□□□□□ -0.25
CCM2-209ENST00000477605 TEX15Q9BXT5 2789 aa13.52□□□□□ -0.25
CCM2-209ENST00000477605 HOXA3O43365 443 aaPredicted RBP13.51□□□□□ -0.25
CCM2-209ENST00000477605 DUSP14O95147 198 aaKnown RBP13.51□□□□□ -0.25
CCM2-209ENST00000477605 CRYGDP07320 174 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 COX6B1P14854 86 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 TRBV27A0A0K0K1C4 114 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 ZNF815PA8K554 130 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 CD7P09564 240 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 DSCR9P59020 149 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 SYT8Q8NBV8 401 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 C9orf85Q96MD7 179 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 TP53TG1Q9Y2A0 90 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 SELENOKQ9Y6D0 94 aa13.51□□□□□ -0.25
CCM2-209ENST00000477605 RPL24P83731 157 aaKnown RBP13.5□□□□□ -0.25
CCM2-209ENST00000477605 LCNL1Q6ZST4 164 aa13.5□□□□□ -0.25
CCM2-209ENST00000477605 ABCA12Q86UK0 2595 aa13.49□□□□□ -0.25
CCM2-209ENST00000477605 IGLV4-69A0A075B6H9 119 aa13.49□□□□□ -0.25
CCM2-209ENST00000477605 IGHV3-16A0A0C4DH30 117 aa13.49□□□□□ -0.25
CCM2-209ENST00000477605 TSHBP01222 138 aa13.49□□□□□ -0.25
CCM2-209ENST00000477605 SRD5A1P18405 259 aa13.49□□□□□ -0.25
CCM2-209ENST00000477605 SNRPD3P62318 126 aaKnown RBP13.49□□□□□ -0.25
CCM2-209ENST00000477605 CSMD1Q96PZ7 3565 aa13.48□□□□□ -0.25
CCM2-209ENST00000477605 TRAV12-3A0A0B4J271 114 aa13.48□□□□□ -0.25
CCM2-209ENST00000477605 J3QR89 54 aa13.48□□□□□ -0.25
CCM2-209ENST00000477605 A0A0J9YX75 114 aa13.48□□□□□ -0.25
CCM2-209ENST00000477605 SDHAF1A6NFY7 115 aa13.48□□□□□ -0.25
CCM2-209ENST00000477605 SCGB1D4Q6XE38 83 aa13.48□□□□□ -0.25
CCM2-209ENST00000477605 RNF152Q8N8N0 203 aa13.48□□□□□ -0.25
CCM2-209ENST00000477605 TEX48A0A1B0GUV7 120 aa13.47□□□□□ -0.25
CCM2-209ENST00000477605 C11orf86A6NJI1 115 aa13.47□□□□□ -0.25
CCM2-209ENST00000477605 F5H697 171 aa13.47□□□□□ -0.25
CCM2-209ENST00000477605 RHOHQ15669 191 aa13.47□□□□□ -0.25
CCM2-209ENST00000477605 FBN2P35556 2912 aa13.46□□□□□ -0.25
CCM2-209ENST00000477605 SPANXB1Q9NS25 103 aaPredicted RBP13.46□□□□□ -0.25
CCM2-209ENST00000477605 APCP25054 2843 aa13.46□□□□□ -0.25
CCM2-209ENST00000477605 K7EQG2 157 aa13.46□□□□□ -0.26
CCM2-209ENST00000477605 UBE2D1P51668 147 aa13.46□□□□□ -0.26
CCM2-209ENST00000477605 GAGE13Q4V321 117 aa13.46□□□□□ -0.26
CCM2-209ENST00000477605 JPT2Q9H910 190 aa13.46□□□□□ -0.26
CCM2-209ENST00000477605 A0A087WWL8 130 aa13.45□□□□□ -0.26
CCM2-209ENST00000477605 AVPP01185 164 aa13.45□□□□□ -0.26
CCM2-209ENST00000477605 SRSF9Q13242 221 aaKnown RBP eCLIP13.45□□□□□ -0.26
CCM2-209ENST00000477605 ZNF876PQ49A33 203 aa13.45□□□□□ -0.26
CCM2-209ENST00000477605 MORN3Q6PF18 240 aaPredicted RBP13.45□□□□□ -0.26
CCM2-209ENST00000477605 NSUN5P1Q3KNT7 163 aa13.44□□□□□ -0.26
CCM2-209ENST00000477605 CD300EQ496F6 205 aaPredicted RBP13.44□□□□□ -0.26
CCM2-209ENST00000477605 IGHV1OR15-1A0A075B7D0 117 aa13.44□□□□□ -0.26
CCM2-209ENST00000477605 H3BMG7 143 aa13.44□□□□□ -0.26
CCM2-209ENST00000477605 M0QY20 66 aa13.44□□□□□ -0.26
CCM2-209ENST00000477605 EDN2P20800 178 aa13.44□□□□□ -0.26
CCM2-209ENST00000477605 WFDC2Q14508 124 aa13.44□□□□□ -0.26
CCM2-209ENST00000477605 TRPT1Q86TN4 253 aaKnown RBP13.44□□□□□ -0.26
CCM2-209ENST00000477605 ABCA2Q9BZC7 2435 aa13.44□□□□□ -0.26
CCM2-209ENST00000477605 ZNF688P0C7X2 276 aa13.43□□□□□ -0.26
CCM2-209ENST00000477605 CREBBPQ92793 2442 aa13.43□□□□□ -0.26
CCM2-209ENST00000477605 J3QLI3 93 aa13.43□□□□□ -0.26
CCM2-209ENST00000477605 NFE4Q86UQ8 179 aa13.43□□□□□ -0.26
CCM2-209ENST00000477605 PLEKHB2Q96CS7 222 aa13.43□□□□□ -0.26
CCM2-209ENST00000477605 PRO0461Q9UI25 63 aa13.43□□□□□ -0.26
CCM2-209ENST00000477605 CSMD2Q7Z408 3487 aa13.43□□□□□ -0.26
CCM2-209ENST00000477605 A0A0J9YY99 117 aa13.42□□□□□ -0.26
CCM2-209ENST00000477605 LYRM7Q5U5X0 104 aa13.42□□□□□ -0.26
CCM2-209ENST00000477605 PGPEP1Q9NXJ5 209 aa13.42□□□□□ -0.26
CCM2-209ENST00000477605 ZNF256Q9Y2P7 627 aaPredicted RBP13.42□□□□□ -0.26
CCM2-209ENST00000477605 RPL39P62891 51 aaKnown RBP13.41□□□□□ -0.26
CCM2-209ENST00000477605 DEFB112Q30KQ8 113 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 Q8N1Y9 231 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 MRPL16Q9NX20 251 aaKnown RBP13.41□□□□□ -0.26
CCM2-209ENST00000477605 MDFICQ9P1T7 246 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 TRGV11A0A075B6L2 103 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 IGHV4-59P01825 116 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 TMEM95Q3KNT9 176 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 LINC01356Q8N9X3 169 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 KLHL30-AS1Q8NEE0 82 aa13.41□□□□□ -0.26
CCM2-209ENST00000477605 ELANEP08246 267 aa13.4□□□□□ -0.26
CCM2-209ENST00000477605 ZNF56Q15929 161 aa13.4□□□□□ -0.26
CCM2-209ENST00000477605 SLC25A29Q8N8R3 303 aa13.4□□□□□ -0.26
CCM2-209ENST00000477605 WFDC12Q8WWY7 111 aa13.4□□□□□ -0.26
CCM2-209ENST00000477605 FAM74A4Q5TZK3 123 aa13.4□□□□□ -0.27
CCM2-209ENST00000477605 DLX4Q92988 240 aaPredicted RBP13.4□□□□□ -0.27
CCM2-209ENST00000477605 EDA2RQ9HAV5 297 aa13.4□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms