RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 COX7B2Q8TF08 81 aa-1.63□□□□□ -2.67
PRPF40A-207ENST00000471701 MED31Q9Y3C7 131 aa-1.63□□□□□ -2.67
PRPF40A-207ENST00000471701 ZCCHC11Q5TAX3 1644 aaKnown RBP-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 TRAV22A0A0B4J277 110 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 PNMA8CA0A1B0GUJ8 204 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 SPINK8P0C7L1 97 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 SLC25A6P12236 298 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 OR8B8Q15620 311 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 C20orf197Q8N268 126 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 BATF3Q9NR55 127 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 TRAPPC2LQ9UL33 140 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 V9GYV3 84 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 CREBBPQ92793 2442 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 A2MP01023 1474 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 KDM5CP41229 1560 aa-1.64□□□□□ -2.67
PRPF40A-207ENST00000471701 UQCRQO14949 82 aa-1.65□□□□□ -2.67
PRPF40A-207ENST00000471701 STX12Q86Y82 276 aa-1.65□□□□□ -2.67
PRPF40A-207ENST00000471701 HOPXQ9BPY8 73 aaPredicted RBP-1.65□□□□□ -2.67
PRPF40A-207ENST00000471701 CCDC171Q6TFL3 1326 aa-1.66□□□□□ -2.67
PRPF40A-207ENST00000471701 ARHGAP31Q2M1Z3 1444 aa-1.66□□□□□ -2.67
PRPF40A-207ENST00000471701 ATRQ13535 2644 aa-1.66□□□□□ -2.67
PRPF40A-207ENST00000471701 SYNMO15061 1565 aa-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 PGRMC1O00264 195 aaKnown RBP-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 DEGS1O15121 323 aa-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 SERPINB1P30740 379 aa-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 RPL22P35268 128 aaKnown RBP-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 TMED4Q7Z7H5 227 aa-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 TAS2R8Q9NYW2 309 aa-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 METTL1Q9UBP6 276 aaKnown RBP-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 NRXN2Q9P2S2 1712 aa-1.66□□□□□ -2.68
PRPF40A-207ENST00000471701 SVEP1Q4LDE5 3571 aa-1.67□□□□□ -2.68
PRPF40A-207ENST00000471701 EP300Q09472 2414 aaPredicted RBP-1.67□□□□□ -2.68
PRPF40A-207ENST00000471701 BCL9LQ86UU0 1499 aa-1.67□□□□□ -2.68
PRPF40A-207ENST00000471701 EIF3AQ14152 1382 aaKnown RBP-1.67□□□□□ -2.68
PRPF40A-207ENST00000471701 PLGLB1Q02325 96 aa-1.67□□□□□ -2.68
PRPF40A-207ENST00000471701 HSD17B12Q53GQ0 312 aa-1.67□□□□□ -2.68
PRPF40A-207ENST00000471701 C3orf33Q6P1S2 294 aa-1.67□□□□□ -2.68
PRPF40A-207ENST00000471701 TCRAP04437 139 aa-1.68□□□□□ -2.68
PRPF40A-207ENST00000471701 CCDC32Q9BV29 185 aa-1.68□□□□□ -2.68
PRPF40A-207ENST00000471701 SLC35B3Q9H1N7 401 aa-1.68□□□□□ -2.68
PRPF40A-207ENST00000471701 PLCE1Q9P212 2302 aa-1.68□□□□□ -2.68
PRPF40A-207ENST00000471701 ARFGEF1Q9Y6D6 1849 aa-1.68□□□□□ -2.68
PRPF40A-207ENST00000471701 TRBV10-3A0A0K0K1G6 114 aa-1.69□□□□□ -2.68
PRPF40A-207ENST00000471701 RPL7P18124 248 aaKnown RBP-1.69□□□□□ -2.68
PRPF40A-207ENST00000471701 POLR2HP52434 150 aaKnown RBP-1.69□□□□□ -2.68
PRPF40A-207ENST00000471701 KRTAP20-2Q3LI61 65 aa-1.69□□□□□ -2.68
PRPF40A-207ENST00000471701 TMEM78Q5T7P6 136 aa-1.69□□□□□ -2.68
PRPF40A-207ENST00000471701 NDUFA11Q86Y39 141 aa-1.69□□□□□ -2.68
PRPF40A-207ENST00000471701 THEM6Q8WUY1 208 aa-1.69□□□□□ -2.68
PRPF40A-207ENST00000471701 GVINP1Q7Z2Y8 2422 aa-1.7□□□□□ -2.68
PRPF40A-207ENST00000471701 K7EQZ3 153 aa-1.7□□□□□ -2.68
PRPF40A-207ENST00000471701 TGP01266 2768 aa-1.7□□□□□ -2.68
PRPF40A-207ENST00000471701 STOML2Q9UJZ1 356 aa-1.7□□□□□ -2.68
PRPF40A-207ENST00000471701 SIPA1L3O60292 1781 aaPredicted RBP-1.7□□□□□ -2.68
PRPF40A-207ENST00000471701 TRAV2A0A0B4J234 112 aa-1.71□□□□□ -2.68
PRPF40A-207ENST00000471701 A0A1W2PRE2 83 aa-1.71□□□□□ -2.68
PRPF40A-207ENST00000471701 MRPS15P82914 257 aaKnown RBP-1.71□□□□□ -2.68
PRPF40A-207ENST00000471701 SNX29P2Q8IUI4 249 aa-1.71□□□□□ -2.68
PRPF40A-207ENST00000471701 DYNLRB2Q8TF09 96 aa-1.71□□□□□ -2.68
PRPF40A-207ENST00000471701 CHMP6Q96FZ7 201 aa-1.71□□□□□ -2.68
PRPF40A-207ENST00000471701 SCP2D1Q9UJQ7 156 aa-1.71□□□□□ -2.68
PRPF40A-207ENST00000471701 MED23Q9ULK4 1368 aa-1.72□□□□□ -2.68
PRPF40A-207ENST00000471701 HERC2O95714 4834 aa-1.72□□□□□ -2.68
PRPF40A-207ENST00000471701 C10orf71Q711Q0 1435 aa-1.72□□□□□ -2.68
PRPF40A-207ENST00000471701 TRAV1-2A0A0B4J238 106 aa-1.72□□□□□ -2.68
PRPF40A-207ENST00000471701 HIST1H1BP16401 226 aaKnown RBP-1.72□□□□□ -2.68
PRPF40A-207ENST00000471701 ZMYM4Q5VZL5 1548 aa-1.72□□□□□ -2.69
PRPF40A-207ENST00000471701 SPTA1P02549 2419 aa-1.72□□□□□ -2.69
PRPF40A-207ENST00000471701 NEBP20929 6669 aa-1.72□□□□□ -2.69
PRPF40A-207ENST00000471701 USF3Q68DE3 2245 aa-1.72□□□□□ -2.69
PRPF40A-207ENST00000471701 PARP14Q460N5 1801 aa-1.73□□□□□ -2.69
PRPF40A-207ENST00000471701 TRAV12-3A0A0B4J271 114 aa-1.73□□□□□ -2.69
PRPF40A-207ENST00000471701 FAM107AO95990 144 aa-1.73□□□□□ -2.69
PRPF40A-207ENST00000471701 HAMPP81172 84 aa-1.73□□□□□ -2.69
PRPF40A-207ENST00000471701 PCLOQ9Y6V0 5065 aa-1.73□□□□□ -2.69
PRPF40A-207ENST00000471701 PSPHP78330 225 aa-1.74□□□□□ -2.69
PRPF40A-207ENST00000471701 SPCS2Q15005 226 aa-1.74□□□□□ -2.69
PRPF40A-207ENST00000471701 BOLA2Q9H3K6 86 aa-1.74□□□□□ -2.69
PRPF40A-207ENST00000471701 ERG28Q9UKR5 140 aa-1.74□□□□□ -2.69
PRPF40A-207ENST00000471701 NOP16Q9Y3C1 178 aaKnown RBP-1.74□□□□□ -2.69
PRPF40A-207ENST00000471701 IFT172Q9UG01 1749 aa-1.74□□□□□ -2.69
PRPF40A-207ENST00000471701 LAMC1P11047 1609 aa-1.75□□□□□ -2.69
PRPF40A-207ENST00000471701 GID8Q9NWU2 228 aa-1.75□□□□□ -2.69
PRPF40A-207ENST00000471701 LOC730098B7Z3J9 87 aa-1.76□□□□□ -2.69
PRPF40A-207ENST00000471701 EDDM3BP56851 147 aa-1.76□□□□□ -2.69
PRPF40A-207ENST00000471701 CCDC115Q96NT0 180 aa-1.76□□□□□ -2.69
PRPF40A-207ENST00000471701 DNAJC15Q9Y5T4 150 aa-1.76□□□□□ -2.69
PRPF40A-207ENST00000471701 CNOT1A5YKK6 2376 aaKnown RBP-1.76□□□□□ -2.69
PRPF40A-207ENST00000471701 MUC22E2RYF6 1773 aaPredicted RBP-1.77□□□□□ -2.69
PRPF40A-207ENST00000471701 CHD8Q9HCK8 2581 aa-1.77□□□□□ -2.69
PRPF40A-207ENST00000471701 E7EQ34 232 aa-1.77□□□□□ -2.69
PRPF40A-207ENST00000471701 PIN1P1O15428 100 aa-1.77□□□□□ -2.69
PRPF40A-207ENST00000471701 WFDC6Q9BQY6 131 aa-1.77□□□□□ -2.69
PRPF40A-207ENST00000471701 SPCS1Q9Y6A9 102 aa-1.77□□□□□ -2.69
PRPF40A-207ENST00000471701 BCE1O60756 84 aa-1.78□□□□□ -2.69
PRPF40A-207ENST00000471701 TMEM91Q6ZNR0 172 aa-1.78□□□□□ -2.69
PRPF40A-207ENST00000471701 ATP6V0E2Q8NHE4 81 aa-1.78□□□□□ -2.69
PRPF40A-207ENST00000471701 UHRF1BP1LA0JNW5 1464 aa-1.78□□□□□ -2.69
PRPF40A-207ENST00000471701 MYO7BQ6PIF6 2116 aa-1.78□□□□□ -2.69
PRPF40A-207ENST00000471701 IBTKQ9P2D0 1353 aaPredicted RBP-1.79□□□□□ -2.7
Retrieved 100 of 20,778 RNA–protein pairs in 390 ms