RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 PLEKHB2Q96CS7 222 aa10.13□□□□□ -0.79
BRCA1-209ENST00000470026 SPANXB1Q9NS25 103 aaPredicted RBP10.13□□□□□ -0.79
BRCA1-209ENST00000470026 M0QY20 66 aa10.13□□□□□ -0.79
BRCA1-209ENST00000470026 HOXA3O43365 443 aaPredicted RBP10.13□□□□□ -0.79
BRCA1-209ENST00000470026 DSCR9P59020 149 aa10.13□□□□□ -0.79
BRCA1-209ENST00000470026 RPL39P62891 51 aaKnown RBP10.13□□□□□ -0.79
BRCA1-209ENST00000470026 IGHV4-59P01825 116 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 ZNF688P0C7X2 276 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 HERVK_113P61574 105 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 WFDC2Q14508 124 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 DEFB112Q30KQ8 113 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 NSUN5P1Q3KNT7 163 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 MDFICQ9P1T7 246 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 A0A0J9YY99 117 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 TMEM238LA0A1B0GVL6 79 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 A6NJY4 79 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 H3BMG7 143 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 SNRPD3P62318 126 aaKnown RBP10.12□□□□□ -0.79
BRCA1-209ENST00000470026 RPL24P83731 157 aaKnown RBP10.12□□□□□ -0.79
BRCA1-209ENST00000470026 RHOHQ15669 191 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 C10orf99Q6UWK7 81 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 Q8N1Y9 231 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 SYT8Q8NBV8 401 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 WFDC12Q8WWY7 111 aa10.12□□□□□ -0.79
BRCA1-209ENST00000470026 ZNF256Q9Y2P7 627 aaPredicted RBP10.12□□□□□ -0.79
BRCA1-209ENST00000470026 SPTBN4Q9H254 2564 aa10.11□□□□□ -0.79
BRCA1-209ENST00000470026 IGHV1OR15-1A0A075B7D0 117 aa10.11□□□□□ -0.79
BRCA1-209ENST00000470026 A0A096LNT2 108 aa10.11□□□□□ -0.79
BRCA1-209ENST00000470026 CD300EQ496F6 205 aaPredicted RBP10.11□□□□□ -0.79
BRCA1-209ENST00000470026 NFE4Q86UQ8 179 aa10.11□□□□□ -0.79
BRCA1-209ENST00000470026 KLHL30-AS1Q8NEE0 82 aa10.11□□□□□ -0.79
BRCA1-209ENST00000470026 NCOR2Q9Y618 2525 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 F5H697 171 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 AMELXQ99217 191 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 SCGB2A2Q13296 93 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 ITPR1Q14643 2758 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 AMTNQ6UX39 209 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 SCGB1D4Q6XE38 83 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 ZNRF2Q8NHG8 242 aa10.1□□□□□ -0.79
BRCA1-209ENST00000470026 CELSR1Q9NYQ6 3014 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 TRAV12-2A0A075B6T6 113 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 TRPT1Q86TN4 253 aaKnown RBP10.09□□□□□ -0.79
BRCA1-209ENST00000470026 LINC01356Q8N9X3 169 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 EDA2RQ9HAV5 297 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.09□□□□□ -0.792e-7■■■■■ 43.6
BRCA1-209ENST00000470026 J3QLI3 93 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 P0DMU3 169 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 FAM231AP0DMU4 169 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 FAM231CP0DMU5 169 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 TSPEAR-AS2P59090 65 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 GAGE13Q4V321 117 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 PGPEP1Q9NXJ5 209 aa10.09□□□□□ -0.79
BRCA1-209ENST00000470026 ELANEP08246 267 aa10.08□□□□□ -0.8
BRCA1-209ENST00000470026 SLC25A29Q8N8R3 303 aa10.08□□□□□ -0.8
BRCA1-209ENST00000470026 CHD8Q9HCK8 2581 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 EMP1P54849 157 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 SRSF9Q13242 221 aaKnown RBP eCLIP10.07□□□□□ -0.8
BRCA1-209ENST00000470026 FAM74A4Q5TZK3 123 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 A8MTW9 85 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 IGHV3-30P01768 117 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 IGHV3-30-5P0DP03 117 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 UBE2D3P61077 147 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 UBE2D2P62837 147 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 ZNF56Q15929 161 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 SPINK13Q1W4C9 94 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 C20orf203Q8NBC4 194 aa10.07□□□□□ -0.8
BRCA1-209ENST00000470026 VPS13CQ709C8 3753 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 TSPAN13O95857 204 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 FSHBP01225 129 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 SYNJ2BPP57105 145 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 DEFB104AQ8WTQ1 72 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 MRPL16Q9NX20 251 aaKnown RBP10.06□□□□□ -0.8
BRCA1-209ENST00000470026 TRGV11A0A075B6L2 103 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 TMEM223A0PJW6 202 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 J3QR89 54 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 IGKV3-20P01619 116 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 ETDBQ3ZM63 59 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 SH2D6Q7Z4S9 175 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 NDUFA11Q86Y39 141 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 UBE2E2Q96LR5 201 aa10.06□□□□□ -0.8
BRCA1-209ENST00000470026 J3QQQ9 107 aa10.05□□□□□ -0.8
BRCA1-209ENST00000470026 TMEM170BQ5T4T1 132 aa10.05□□□□□ -0.8
BRCA1-209ENST00000470026 CFAP126Q5VTH2 177 aa10.05□□□□□ -0.8
BRCA1-209ENST00000470026 SPAG8Q99932 426 aaPredicted RBP10.05□□□□□ -0.8
BRCA1-209ENST00000470026 ZNF702PQ9H963 129 aa10.05□□□□□ -0.8
BRCA1-209ENST00000470026 VPREB3Q9UKI3 123 aa10.05□□□□□ -0.8
BRCA1-209ENST00000470026 I3L3M4 83 aa10.04□□□□□ -0.8
BRCA1-209ENST00000470026 LEPROTO15243 131 aa10.04□□□□□ -0.8
BRCA1-209ENST00000470026 HOXD3P31249 432 aaPredicted RBP10.04□□□□□ -0.8
BRCA1-209ENST00000470026 DLX4Q92988 240 aaPredicted RBP10.04□□□□□ -0.8
BRCA1-209ENST00000470026 SPATA25Q9BR10 227 aa10.04□□□□□ -0.8
BRCA1-209ENST00000470026 ATP6V0E2Q8NHE4 81 aa10.04□□□□□ -0.8
BRCA1-209ENST00000470026 TMEM238C9JI98 176 aa10.03□□□□□ -0.8
BRCA1-209ENST00000470026 CFC1BP0CG36 223 aa10.03□□□□□ -0.8
BRCA1-209ENST00000470026 CFC1P0CG37 223 aa10.03□□□□□ -0.8
BRCA1-209ENST00000470026 RBMY1A1P0DJD3 496 aaKnown RBP10.03□□□□□ -0.8
BRCA1-209ENST00000470026 RBMY1CP0DJD4 496 aa10.03□□□□□ -0.8
BRCA1-209ENST00000470026 SMCPP49901 116 aaPredicted RBP10.03□□□□□ -0.8
BRCA1-209ENST00000470026 RBMY1FQ15415 496 aaKnown RBP10.03□□□□□ -0.8
BRCA1-209ENST00000470026 Q6YL49 198 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms