RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 TOMM7Q9P0U1 55 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 S4R3C0 116 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 IGHV3OR16-13A0A075B7E8 117 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 IGHV3-74A0A0B4J1X5 117 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 C20orf203Q8NBC4 194 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 LINC01587Q99440 93 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 PRO3102Q9H379 93 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 TRBV30A0A0K0K1B3 111 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 IGHV3-23P01764 117 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 CFAP126Q5VTH2 177 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 K7ERJ3 54 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 NBL1P41271 181 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 Q8N9W7 124 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 TRAV12-3A0A0B4J271 114 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 NAA38Q9BRA0 125 aaKnown RBP5.41□□□□□ -1.54
SYNE1-216ENST00000461872 USP9YO00507 2555 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-216ENST00000461872 NXPH4O95158 308 aa5.4□□□□□ -1.54
SYNE1-216ENST00000461872 ZFAND3Q9H8U3 227 aa5.4□□□□□ -1.54
SYNE1-216ENST00000461872 LGALS9O00182 355 aa5.4□□□□□ -1.54
SYNE1-216ENST00000461872 IGHV4-39P01824 125 aa5.4□□□□□ -1.54
SYNE1-216ENST00000461872 DAZ2Q13117 558 aaKnown RBP5.4□□□□□ -1.54
SYNE1-216ENST00000461872 DAZ4Q86SG3 579 aaKnown RBP5.4□□□□□ -1.54
SYNE1-216ENST00000461872 DAZ3Q9NR90 486 aaKnown RBP5.4□□□□□ -1.54
SYNE1-216ENST00000461872 RNF185Q96GF1 192 aa5.4□□□□□ -1.54
SYNE1-216ENST00000461872 HHLA3Q9XRX5 114 aa5.4□□□□□ -1.54
SYNE1-216ENST00000461872 C5orf56Q8N8D9 126 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 ZNRD1Q9P1U0 126 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 OVOL3O00110 214 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 NRACQ8N912 160 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 LINC01356Q8N9X3 169 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 USP9XQ93008 2570 aaPredicted RBP5.4□□□□□ -1.55
SYNE1-216ENST00000461872 MALP21145 153 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 FAM222AQ5U5X8 452 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 PRIMA1Q86XR5 153 aa5.4□□□□□ -1.55
SYNE1-216ENST00000461872 TINCRA0A1B0GVN0 87 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 U3KQE9 123 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 MSMBP08118 114 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 HTN3P15516 51 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 WFDC12Q8WWY7 111 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 URB1-AS1Q96HZ7 61 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 SIRPDQ9H106 197 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 SONP18583 2426 aaKnown RBP5.39□□□□□ -1.55
SYNE1-216ENST00000461872 H3BUX3 64 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 TRACP01848 142 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 MRGPRG-AS1Q2M3A8 158 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 LHFPL4Q7Z7J7 247 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 ICOSQ9Y6W8 199 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 C17orf77Q96MU5 243 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV1-58A0A0C4DH39 117 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 SOCS3O14543 225 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 TGFAP01135 160 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 SORL1Q92673 2214 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV3-49A0A0A0MS15 119 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 UBE2D1P51668 147 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 LINC00643Q86TS7 51 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 C15orf53Q8NAA6 179 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 PTH2Q96A98 100 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 A0A1W2PNU3 283 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-216ENST00000461872 COX6B1P14854 86 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 CXCL5P42830 114 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 UBE2D3P61077 147 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 UBE2D2P62837 147 aa5.39□□□□□ -1.55
SYNE1-216ENST00000461872 TRBV7-3A0A075B6L6 115 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV3-66A0A0C4DH42 116 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 ADARB2-AS1A8MUL3 147 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 PPDPFQ9H3Y8 114 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 IGKV3D-20A0A0C4DH25 116 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 C1orf229Q6ZS94 237 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-216ENST00000461872 DAND5Q8N907 189 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 MCRIP2Q9BUT9 160 aaKnown RBP5.38□□□□□ -1.55
SYNE1-216ENST00000461872 Q8N1Y9 231 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 SAP30O75446 220 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 MIAQ16674 131 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 PRORYQ9H606 182 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 TIRAPP58753 221 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 UBE2E2Q96LR5 201 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 PRRC2AP48634 2157 aaKnown RBP5.38□□□□□ -1.55
SYNE1-216ENST00000461872 AMTNQ6UX39 209 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 RITA1Q96K30 269 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 RNF114Q9Y508 228 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 A0A0J9YY99 117 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 A4D1N5 150 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 VWC2LB2RUY7 222 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 JMJD7-PLA2G4BH0Y9G9 81 aa5.38□□□□□ -1.55
SYNE1-216ENST00000461872 WFDC2Q14508 124 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 SUMO4Q6EEV6 95 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 SH2D6Q7Z4S9 175 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 PRR30Q53SZ7 412 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-216ENST00000461872 KLLNB2CW77 178 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 STHQ8IWL8 128 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 TRAV4A0A0B4J268 109 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 LYNX1G3V0Z9 82 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 LYNX1P0DP58 116 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV3-11P01762 117 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 CRIP1P50238 77 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 FXYD7P58549 80 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 IGKV3-20P01619 116 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 LY6EQ16553 131 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV3OR16-8A0A075B7F1 116 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 CD24P25063 80 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms