RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 BOLA1Q9Y3E2 137 aa12.59□□□□□ -0.39
HOXD3-204ENST00000459979 TRAV9-2A0A087WT02 112 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 SNAI2O43623 268 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 CRYGDP07320 174 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 OR5AL1P0C617 328 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 LINC00694P0DN24 101 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 RPL19P84098 196 aaKnown RBP12.58□□□□□ -0.4
HOXD3-204ENST00000459979 ALKAL2Q6UX46 152 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 SPATA12Q7Z6I5 190 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 WFDC10BQ8IUB3 73 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 MED9Q9NWA0 146 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 LY96Q9Y6Y9 160 aa12.58□□□□□ -0.4
HOXD3-204ENST00000459979 M0R381 172 aa12.57□□□□□ -0.4
HOXD3-204ENST00000459979 GNG4P50150 75 aa12.57□□□□□ -0.4
HOXD3-204ENST00000459979 LINC00315P59091 139 aa12.57□□□□□ -0.4
HOXD3-204ENST00000459979 PRR27Q6MZM9 219 aa12.57□□□□□ -0.4
HOXD3-204ENST00000459979 TRBV20OR9-2A0A075B6H5 130 aa12.56□□□□□ -0.4
HOXD3-204ENST00000459979 RAB19A4D1S5 217 aa12.56□□□□□ -0.4
HOXD3-204ENST00000459979 C19orf71A6NCJ1 209 aa12.56□□□□□ -0.4
HOXD3-204ENST00000459979 ATP6V0E2Q8NHE4 81 aa12.56□□□□□ -0.4
HOXD3-204ENST00000459979 GTSF1LQ9H1H1 148 aa12.56□□□□□ -0.4
HOXD3-204ENST00000459979 EVI2AP22794 236 aa12.55□□□□□ -0.4
HOXD3-204ENST00000459979 LELP1Q5T871 98 aa12.55□□□□□ -0.4
HOXD3-204ENST00000459979 Q6ZRN7 208 aaPredicted RBP12.55□□□□□ -0.4
HOXD3-204ENST00000459979 NKX2-5P52952 324 aaPredicted RBP12.54□□□□□ -0.4
HOXD3-204ENST00000459979 C14orf178Q8N769 122 aaPredicted RBP12.54□□□□□ -0.4
HOXD3-204ENST00000459979 OR10AG1Q8NH19 301 aa12.54□□□□□ -0.4
HOXD3-204ENST00000459979 BIN3Q9NQY0 253 aa12.54□□□□□ -0.4
HOXD3-204ENST00000459979 APOBP04114 4563 aaKnown RBP12.53□□□□□ -0.4
HOXD3-204ENST00000459979 A0A087WWL8 130 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 TRAV8-6A0A0B4J262 113 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 IGHV3-38A0A0C4DH36 116 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 KRTAP10-2P60368 255 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 RPS20P60866 119 aaKnown RBP12.53□□□□□ -0.4
HOXD3-204ENST00000459979 LINC01556Q5JQF7 62 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 FAM74A4Q5TZK3 123 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 NFE4Q86UQ8 179 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 Q8N1X5 172 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 C10orf126Q8N4M7 172 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 DAZAP1Q96EP5 407 aaKnown RBP12.53□□□□□ -0.4
HOXD3-204ENST00000459979 Q9UF83 564 aa12.53□□□□□ -0.4
HOXD3-204ENST00000459979 TRBV10-1A0A0K0K1A3 114 aa12.52□□□□□ -0.41
HOXD3-204ENST00000459979 GAGE12JA6NER3 117 aa12.52□□□□□ -0.41
HOXD3-204ENST00000459979 TMEM250H0YL14 139 aa12.52□□□□□ -0.41
HOXD3-204ENST00000459979 GAGE1Q13065 139 aa12.52□□□□□ -0.41
HOXD3-204ENST00000459979 GAGE4Q13068 117 aa12.52□□□□□ -0.41
HOXD3-204ENST00000459979 GAGE5Q13069 117 aa12.52□□□□□ -0.41
HOXD3-204ENST00000459979 GAGE13Q4V321 117 aa12.52□□□□□ -0.41
HOXD3-204ENST00000459979 LCE2DQ5TA82 110 aaPredicted RBP12.52□□□□□ -0.41
HOXD3-204ENST00000459979 RBFOX3A6NFN3 312 aa12.51□□□□□ -0.41
HOXD3-204ENST00000459979 NDUFS6O75380 124 aaKnown RBP12.51□□□□□ -0.41
HOXD3-204ENST00000459979 IGLC6P0CF74 106 aa12.51□□□□□ -0.41
HOXD3-204ENST00000459979 OR10J3Q5JRS4 329 aa12.51□□□□□ -0.41
HOXD3-204ENST00000459979 RAB4BP61018 213 aa12.5□□□□□ -0.41
HOXD3-204ENST00000459979 SPANXN1Q5VSR9 72 aa12.5□□□□□ -0.41
HOXD3-204ENST00000459979 OR2D3Q8NGH3 330 aa12.5□□□□□ -0.41
HOXD3-204ENST00000459979 MSRB1Q9NZV6 116 aa12.5□□□□□ -0.41
HOXD3-204ENST00000459979 A0A087WWC5 75 aa12.49□□□□□ -0.41
HOXD3-204ENST00000459979 P01737 135 aa12.49□□□□□ -0.41
HOXD3-204ENST00000459979 OR10G8Q8NGN5 311 aa12.49□□□□□ -0.41
HOXD3-204ENST00000459979 TNFRSF18Q9Y5U5 241 aa12.49□□□□□ -0.41
HOXD3-204ENST00000459979 XKRY2A2RUG3 117 aa12.48□□□□□ -0.41
HOXD3-204ENST00000459979 FER1L6-AS1Q8NA97 138 aa12.48□□□□□ -0.41
HOXD3-204ENST00000459979 KIF25-AS1Q9Y6Z4 181 aa12.48□□□□□ -0.41
HOXD3-204ENST00000459979 DNAH5Q8TE73 4624 aa12.47□□□□□ -0.41
HOXD3-204ENST00000459979 IBA57-AS1B1ANH7 110 aa12.47□□□□□ -0.41
HOXD3-204ENST00000459979 F2Z2F3 143 aa12.47□□□□□ -0.41
HOXD3-204ENST00000459979 GZMBP10144 247 aa12.47□□□□□ -0.41
HOXD3-204ENST00000459979 NUDT10Q8NFP7 164 aa12.47□□□□□ -0.41
HOXD3-204ENST00000459979 OCC1Q8TAD7 63 aa12.47□□□□□ -0.41
HOXD3-204ENST00000459979 NUDT11Q96G61 164 aa12.47□□□□□ -0.41
HOXD3-204ENST00000459979 TRBV7-3A0A075B6L6 115 aa12.46□□□□□ -0.41
HOXD3-204ENST00000459979 MUC21A0A0G2JKD1 596 aa12.46□□□□□ -0.41
HOXD3-204ENST00000459979 MUC21A0A140T8X8 626 aa12.46□□□□□ -0.41
HOXD3-204ENST00000459979 CACNG7P62955 275 aa12.46□□□□□ -0.41
HOXD3-204ENST00000459979 RPL36AP83881 106 aaKnown RBP12.46□□□□□ -0.41
HOXD3-204ENST00000459979 RPL36ALQ969Q0 106 aaKnown RBP12.46□□□□□ -0.41
HOXD3-204ENST00000459979 K7EN84 100 aa12.45□□□□□ -0.42
HOXD3-204ENST00000459979 FUSP35637 526 aaKnown RBP eCLIP12.45□□□□□ -0.42
HOXD3-204ENST00000459979 UBE2D3P61077 147 aa12.45□□□□□ -0.42
HOXD3-204ENST00000459979 UBE2D2P62837 147 aa12.45□□□□□ -0.42
HOXD3-204ENST00000459979 WDR73Q6P4I2 378 aa12.45□□□□□ -0.42
HOXD3-204ENST00000459979 AP1S3Q96PC3 154 aa12.45□□□□□ -0.42
HOXD3-204ENST00000459979 ZNF56Q15929 161 aa12.44□□□□□ -0.42
HOXD3-204ENST00000459979 FAM210AQ96ND0 272 aa12.44□□□□□ -0.42
HOXD3-204ENST00000459979 SMIM17P0DL12 118 aa12.43□□□□□ -0.42
HOXD3-204ENST00000459979 LAGE3Q14657 143 aa12.43□□□□□ -0.42
HOXD3-204ENST00000459979 TOR2AQ5JU69 321 aa12.43□□□□□ -0.42
HOXD3-204ENST00000459979 TPPP3Q9BW30 176 aa12.43□□□□□ -0.42
HOXD3-204ENST00000459979 CNFNQ9BYD5 112 aa12.43□□□□□ -0.42
HOXD3-204ENST00000459979 CTRLP40313 264 aa12.42□□□□□ -0.42
HOXD3-204ENST00000459979 ERVFC1-1P60608 527 aa12.42□□□□□ -0.42
HOXD3-204ENST00000459979 FAM231DQ6ZW35 169 aa12.42□□□□□ -0.42
HOXD3-204ENST00000459979 NEXN-AS1Q8NBZ9 246 aa12.42□□□□□ -0.42
HOXD3-204ENST00000459979 EIF5A2Q9GZV4 153 aaKnown RBP12.42□□□□□ -0.42
HOXD3-204ENST00000459979 RNASE7Q9H1E1 156 aaKnown RBP12.42□□□□□ -0.42
HOXD3-204ENST00000459979 RPP21Q9H633 154 aaKnown RBP12.42□□□□□ -0.42
HOXD3-204ENST00000459979 F5H697 171 aa12.41□□□□□ -0.42
HOXD3-204ENST00000459979 IGHV3-30P01768 117 aa12.41□□□□□ -0.42
HOXD3-204ENST00000459979 IGHV3-33P01772 117 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms