RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 S100A8P05109 93 aa7.87□□□□□ -1.15
SCN9A-205ENST00000454569 S100A4P26447 101 aaKnown RBP7.87□□□□□ -1.15
SCN9A-205ENST00000454569 RRN3P1Q2M238 152 aa7.87□□□□□ -1.15
SCN9A-205ENST00000454569 Q8NAQ8 132 aa7.87□□□□□ -1.15
SCN9A-205ENST00000454569 TRGV11A0A075B6L2 103 aa7.86□□□□□ -1.15
SCN9A-205ENST00000454569 IGHV4-28A0A0C4DH34 117 aa7.86□□□□□ -1.15
SCN9A-205ENST00000454569 A0A1B0GW15 77 aa7.86□□□□□ -1.15
SCN9A-205ENST00000454569 OR5AL1P0C617 328 aa7.86□□□□□ -1.15
SCN9A-205ENST00000454569 NTF3P20783 257 aa7.86□□□□□ -1.15
SCN9A-205ENST00000454569 EMP1P54849 157 aa7.86□□□□□ -1.15
SCN9A-205ENST00000454569 COTL1Q14019 142 aa7.86□□□□□ -1.15
SCN9A-205ENST00000454569 TMEM263Q8WUH6 116 aaKnown RBP7.86□□□□□ -1.15
SCN9A-205ENST00000454569 MRPL16Q9NX20 251 aaKnown RBP7.86□□□□□ -1.15
SCN9A-205ENST00000454569 F2Z2F3 143 aa7.85□□□□□ -1.15
SCN9A-205ENST00000454569 M0R381 172 aa7.85□□□□□ -1.15
SCN9A-205ENST00000454569 APCSP02743 223 aa7.85□□□□□ -1.15
SCN9A-205ENST00000454569 NDUFA6P56556 154 aa7.85□□□□□ -1.15
SCN9A-205ENST00000454569 TM2D3Q9BRN9 247 aa7.85□□□□□ -1.15
SCN9A-205ENST00000454569 ZMAT4Q9H898 229 aa7.85□□□□□ -1.15
SCN9A-205ENST00000454569 NOP10Q9NPE3 64 aaKnown RBP7.85□□□□□ -1.15
SCN9A-205ENST00000454569 CHTOPQ9Y3Y2 248 aaKnown RBP7.85□□□□□ -1.15
SCN9A-205ENST00000454569 MED14OSP0DP75 135 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 ZNF415Q09FC8 603 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 SLAQ13239 276 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 Q6ZTI0 123 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 CNFNQ9BYD5 112 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 CELA1Q9UNI1 258 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 IGHV4-4A0A075B6R2 117 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 SNRPEP62304 92 aaKnown RBP7.84□□□□□ -1.15
SCN9A-205ENST00000454569 TWIST1Q15672 202 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 POM121L12Q8N7R1 296 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 C16orf74Q96GX8 76 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 SAMD10Q9BYL1 202 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 TP53TG1Q9Y2A0 90 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 PHLDA3Q9Y5J5 127 aa7.84□□□□□ -1.15
SCN9A-205ENST00000454569 SMIM9A6NGZ8 99 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 NXPH4O95158 308 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 EVI2AP22794 236 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 PCP4P48539 62 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 KIAA1644Q3SXP7 199 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 ZNF876PQ49A33 203 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 SPANXN1Q5VSR9 72 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 GATD1Q8NB37 220 aa7.83□□□□□ -1.16
SCN9A-205ENST00000454569 C5orf52A6NGY3 159 aa7.82□□□□□ -1.16
SCN9A-205ENST00000454569 M0R2P5 195 aa7.82□□□□□ -1.16
SCN9A-205ENST00000454569 CACNG7P62955 275 aa7.82□□□□□ -1.16
SCN9A-205ENST00000454569 ZNF493Q6ZR52 646 aa7.82□□□□□ -1.16
SCN9A-205ENST00000454569 KIF25-AS1Q9Y6Z4 181 aa7.82□□□□□ -1.16
SCN9A-205ENST00000454569 FBN3Q75N90 2809 aa7.82□□□□□ -1.16
SCN9A-205ENST00000454569 TRGV1A0A0A0MS02 117 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 GAGE12BA1L429 117 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 GAGE7O76087 117 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 GAS8-AS1O95177 125 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 GAGE12FP0CL80 117 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 GAGE12GP0CL81 117 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 GAGE12IP0CL82 117 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 MIFP14174 115 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 SRIP30626 198 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 LINC00315P59091 139 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 DAZ2Q13117 558 aaKnown RBP7.81□□□□□ -1.16
SCN9A-205ENST00000454569 FAM222AQ5U5X8 452 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 C14orf178Q8N769 122 aaPredicted RBP7.81□□□□□ -1.16
SCN9A-205ENST00000454569 RASL10AQ92737 203 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 B9D2Q9BPU9 175 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 SPXQ9BT56 116 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 STAB2Q8WWQ8 2551 aa7.81□□□□□ -1.16
SCN9A-205ENST00000454569 A0A087WWL8 130 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 CRYGDP07320 174 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 Q6ZSN1 163 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 RNF185Q96GF1 192 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 SPATA25Q9BR10 227 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 DKK2Q9UBU2 259 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 IGHV3-73A0A0B4J1V6 119 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 A0A0J9YWU9 116 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 IGHV3-53P01767 116 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 OR10J3Q5JRS4 329 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 SMIM15Q7Z3B0 74 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 AMN1Q8IY45 258 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 LINC00612Q8N6U2 182 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 PTH2Q96A98 100 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 ZNF479Q96JC4 524 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 TMEM191AQ9H0A3 160 aa7.8□□□□□ -1.16
SCN9A-205ENST00000454569 TGP01266 2768 aa7.79□□□□□ -1.16
SCN9A-205ENST00000454569 DEFB130BP0DP73 79 aa7.79□□□□□ -1.16
SCN9A-205ENST00000454569 DEFB130AP0DP74 79 aa7.79□□□□□ -1.16
SCN9A-205ENST00000454569 HOXA5P20719 270 aa7.79□□□□□ -1.16
SCN9A-205ENST00000454569 COA6Q5JTJ3 125 aaKnown RBP7.79□□□□□ -1.16
SCN9A-205ENST00000454569 CFAP126Q5VTH2 177 aa7.79□□□□□ -1.16
SCN9A-205ENST00000454569 UFSP1Q6NVU6 142 aa7.79□□□□□ -1.16
SCN9A-205ENST00000454569 ALKBH7Q9BT30 221 aaPredicted RBP7.79□□□□□ -1.16
SCN9A-205ENST00000454569 Q9UF83 564 aa7.79□□□□□ -1.16
SCN9A-205ENST00000454569 SMKR1H3BMG3 65 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 RS1O15537 224 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 GATA1P15976 413 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-205ENST00000454569 RAB4AP20338 218 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 Q0VG73 95 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 ODF1Q14990 250 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 PDZD11Q5EBL8 140 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 FAM74A4Q5TZK3 123 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 FAM104BQ5XKR9 115 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms