RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TGFAP01135 160 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 GATA3P23771 443 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 C12orf74Q32Q52 190 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 HIST1H4GQ99525 98 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 RHPN1-AS1Q9BWJ2 59 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 PF4V1P10720 104 aa12.31□□□□□ -0.44
CLCNKA-203ENST00000439316 RPL11P62913 178 aaKnown RBP12.31□□□□□ -0.44
CLCNKA-203ENST00000439316 A0A1B0GWB2 263 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 H3BUX3 64 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 RIPPLY3P57055 190 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 KIF25-AS1Q9Y6Z4 181 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 MXRA5Q9NR99 2828 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 KLLNB2CW77 178 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 IGLV1-40P01703 118 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 LINC00315P59091 139 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 RPL32P62910 135 aaKnown RBP12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 ZNF479Q96JC4 524 aa12.3□□□□□ -0.44
CLCNKA-203ENST00000439316 PRSS29PA6NIE9 313 aa12.29□□□□□ -0.44
CLCNKA-203ENST00000439316 DAZ1Q9NQZ3 744 aaKnown RBP12.29□□□□□ -0.44
CLCNKA-203ENST00000439316 LGALS1P09382 135 aaKnown RBP12.29□□□□□ -0.44
CLCNKA-203ENST00000439316 IGHV4-31P0DP07 118 aa12.29□□□□□ -0.44
CLCNKA-203ENST00000439316 FOXI2Q6ZQN5 318 aa12.29□□□□□ -0.44
CLCNKA-203ENST00000439316 IGKV3-7A0A075B6H7 116 aa12.28□□□□□ -0.44
CLCNKA-203ENST00000439316 IGHV4OR15-8A0A075B7B6 117 aa12.28□□□□□ -0.44
CLCNKA-203ENST00000439316 A0A087WW49 117 aa12.28□□□□□ -0.44
CLCNKA-203ENST00000439316 BLCAPP62952 87 aa12.28□□□□□ -0.44
CLCNKA-203ENST00000439316 Q6ZS46 218 aa12.28□□□□□ -0.44
CLCNKA-203ENST00000439316 LCNL1Q6ZST4 164 aa12.28□□□□□ -0.44
CLCNKA-203ENST00000439316 NOTCH2Q04721 2471 aa12.28□□□□□ -0.44
CLCNKA-203ENST00000439316 AGRNO00468 2067 aa12.27□□□□□ -0.44
CLCNKA-203ENST00000439316 CFHR3Q02985 330 aa12.27□□□□□ -0.44
CLCNKA-203ENST00000439316 RRN3P1Q2M238 152 aa12.27□□□□□ -0.44
CLCNKA-203ENST00000439316 WFDC11Q8NEX6 87 aa12.27□□□□□ -0.44
CLCNKA-203ENST00000439316 PRADC1Q9BSG0 188 aa12.27□□□□□ -0.44
CLCNKA-203ENST00000439316 MUC4Q99102 2169 aa12.27□□□□□ -0.45
CLCNKA-203ENST00000439316 AKAP9Q99996 3911 aa12.26□□□□□ -0.45
CLCNKA-203ENST00000439316 ACANP16112 2415 aa12.26□□□□□ -0.45
CLCNKA-203ENST00000439316 TEX48A0A1B0GUV7 120 aa12.26□□□□□ -0.45
CLCNKA-203ENST00000439316 K7EMT4 169 aa12.26□□□□□ -0.45
CLCNKA-203ENST00000439316 DUSP14O95147 198 aaKnown RBP12.26□□□□□ -0.45
CLCNKA-203ENST00000439316 CYSLTR1Q9Y271 337 aa12.26□□□□□ -0.45
CLCNKA-203ENST00000439316 J3QLI3 93 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 RPL24P83731 157 aaKnown RBP12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 LINC01549A6NIU2 74 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 F8W1H4 67 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 TSHBP01222 138 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 CRYGDP07320 174 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 EDN2P20800 178 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 ID1P41134 155 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 POLR2KP53803 58 aaKnown RBP12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 SAMD13Q5VXD3 122 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 SUMO4Q6EEV6 95 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 FAM159AQ6UWV7 190 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 DCANP1Q8TF63 244 aa12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 SONP18583 2426 aaKnown RBP12.25□□□□□ -0.45
CLCNKA-203ENST00000439316 MYO9AB2RTY4 2548 aa12.24□□□□□ -0.45
CLCNKA-203ENST00000439316 SRD5A1P18405 259 aa12.24□□□□□ -0.45
CLCNKA-203ENST00000439316 IGLV4-69A0A075B6H9 119 aa12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 IGIPA6NJ69 53 aa12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 ZNF815PA8K554 130 aa12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 ZFP2Q6ZN57 461 aa12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 ZNF580Q9UK33 172 aa12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 TP53TG1Q9Y2A0 90 aa12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 JPT2Q9H910 190 aa12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 SPANXB1Q9NS25 103 aaPredicted RBP12.23□□□□□ -0.45
CLCNKA-203ENST00000439316 MORN3Q6PF18 240 aaPredicted RBP12.22□□□□□ -0.45
CLCNKA-203ENST00000439316 C11orf86A6NJI1 115 aa12.21□□□□□ -0.45
CLCNKA-203ENST00000439316 H3BMG7 143 aa12.21□□□□□ -0.45
CLCNKA-203ENST00000439316 WFDC2Q14508 124 aa12.21□□□□□ -0.45
CLCNKA-203ENST00000439316 PAPPA-AS1Q5QFB9 102 aa12.21□□□□□ -0.45
CLCNKA-203ENST00000439316 PLEKHB2Q96CS7 222 aa12.21□□□□□ -0.45
CLCNKA-203ENST00000439316 ODF3Q96PU9 254 aa12.21□□□□□ -0.45
CLCNKA-203ENST00000439316 LGALS9O00182 355 aa12.21□□□□□ -0.46
CLCNKA-203ENST00000439316 VCYO14598 125 aa12.21□□□□□ -0.46
CLCNKA-203ENST00000439316 SCGB2A2Q13296 93 aa12.21□□□□□ -0.46
CLCNKA-203ENST00000439316 PMVKQ15126 192 aa12.21□□□□□ -0.46
CLCNKA-203ENST00000439316 TMEM141Q96I45 108 aa12.21□□□□□ -0.46
CLCNKA-203ENST00000439316 TIMM17AQ99595 171 aa12.21□□□□□ -0.46
CLCNKA-203ENST00000439316 PRO0461Q9UI25 63 aa12.21□□□□□ -0.46
CLCNKA-203ENST00000439316 A0A087WWL8 130 aa12.2□□□□□ -0.46
CLCNKA-203ENST00000439316 TRBV6-5A0A0K0K1A5 114 aa12.2□□□□□ -0.46
CLCNKA-203ENST00000439316 HOXA3O43365 443 aaPredicted RBP12.2□□□□□ -0.46
CLCNKA-203ENST00000439316 CD7P09564 240 aa12.2□□□□□ -0.46
CLCNKA-203ENST00000439316 C9orf85Q96MD7 179 aa12.2□□□□□ -0.46
CLCNKA-203ENST00000439316 TRAV12-3A0A0B4J271 114 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 HERVK_113P61574 105 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 AMTNQ6UX39 209 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 KIR2DL4Q99706 377 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 TRBV27A0A0K0K1C4 114 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 TMEM238LA0A1B0GVL6 79 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 A6NJY4 79 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 PSMB8P28062 276 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 UBE2D1P51668 147 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 RPL39P62891 51 aaKnown RBP12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 DEFB112Q30KQ8 113 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 CD300EQ496F6 205 aaPredicted RBP12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 SCGB1D4Q6XE38 83 aa12.19□□□□□ -0.46
CLCNKA-203ENST00000439316 IGHV3-16A0A0C4DH30 117 aa12.18□□□□□ -0.46
CLCNKA-203ENST00000439316 SDHAF1A6NFY7 115 aa12.18□□□□□ -0.46
CLCNKA-203ENST00000439316 FSHBP01225 129 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms