RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 GAGE12JA6NER3 117 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 DNAH10OSP0CZ25 163 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 GAGE1Q13065 139 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 GAGE4Q13068 117 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 GAGE5Q13069 117 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 GAGE13Q4V321 117 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 OR10J3Q5JRS4 329 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 C14orf178Q8N769 122 aaPredicted RBP10.34□□□□□ -0.75
LIMS3-201ENST00000437679 GTSF1LQ9H1H1 148 aa10.34□□□□□ -0.75
LIMS3-201ENST00000437679 IGHV3-38A0A0C4DH36 116 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 IGLV2-8P01709 118 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 CRYGDP07320 174 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 NKX2-5P52952 324 aaPredicted RBP10.33□□□□□ -0.76
LIMS3-201ENST00000437679 LELP1Q5T871 98 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 SPANXN1Q5VSR9 72 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 NFE4Q86UQ8 179 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 C10orf126Q8N4M7 172 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 OR10AG1Q8NH19 301 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 BIN3Q9NQY0 253 aa10.33□□□□□ -0.76
LIMS3-201ENST00000437679 DYNC1H1Q14204 4646 aaKnown RBP10.33□□□□□ -0.76
LIMS3-201ENST00000437679 SNAI2O43623 268 aa10.32□□□□□ -0.76
LIMS3-201ENST00000437679 OR5AL1P0C617 328 aa10.32□□□□□ -0.76
LIMS3-201ENST00000437679 RPS20P60866 119 aaKnown RBP10.32□□□□□ -0.76
LIMS3-201ENST00000437679 SSBP4Q9BWG4 385 aaPredicted RBP10.32□□□□□ -0.76
LIMS3-201ENST00000437679 LINC00694P0DN24 101 aa10.31□□□□□ -0.76
LIMS3-201ENST00000437679 OR2D3Q8NGH3 330 aa10.31□□□□□ -0.76
LIMS3-201ENST00000437679 MSRB1Q9NZV6 116 aa10.31□□□□□ -0.76
LIMS3-201ENST00000437679 MUC21A0A0G2JKD1 596 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 MUC21A0A140T8X8 626 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 XKRY2A2RUG3 117 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 C19orf71A6NCJ1 209 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 RBFOX3A6NFN3 312 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 P01737 135 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 LINC01556Q5JQF7 62 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 Q6ZRN7 208 aaPredicted RBP10.3□□□□□ -0.76
LIMS3-201ENST00000437679 Q9UF83 564 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 TNFRSF18Q9Y5U5 241 aa10.3□□□□□ -0.76
LIMS3-201ENST00000437679 TRBV20OR9-2A0A075B6H5 130 aa10.29□□□□□ -0.76
LIMS3-201ENST00000437679 TRBV10-1A0A0K0K1A3 114 aa10.29□□□□□ -0.76
LIMS3-201ENST00000437679 SSTP61278 116 aa10.29□□□□□ -0.76
LIMS3-201ENST00000437679 ZNF56Q15929 161 aa10.29□□□□□ -0.76
LIMS3-201ENST00000437679 FER1L6-AS1Q8NA97 138 aa10.29□□□□□ -0.76
LIMS3-201ENST00000437679 LYPD6BQ8NI32 183 aa10.29□□□□□ -0.76
LIMS3-201ENST00000437679 TPPP3Q9BW30 176 aa10.29□□□□□ -0.76
LIMS3-201ENST00000437679 A0A087WWC5 75 aa10.28□□□□□ -0.76
LIMS3-201ENST00000437679 C16orf90A8MZG2 172 aa10.28□□□□□ -0.76
LIMS3-201ENST00000437679 SMIM17P0DL12 118 aa10.28□□□□□ -0.76
LIMS3-201ENST00000437679 GZMBP10144 247 aa10.28□□□□□ -0.76
LIMS3-201ENST00000437679 RAB4BP61018 213 aa10.28□□□□□ -0.76
LIMS3-201ENST00000437679 RPL36AP83881 106 aaKnown RBP10.28□□□□□ -0.76
LIMS3-201ENST00000437679 SPATA12Q7Z6I5 190 aa10.28□□□□□ -0.76
LIMS3-201ENST00000437679 RPL36ALQ969Q0 106 aaKnown RBP10.28□□□□□ -0.76
LIMS3-201ENST00000437679 TMEM250H0YL14 139 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 EREGO14944 169 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 IGHV3-30P01768 117 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 IGHV3-33P01772 117 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 IGLC6P0CF74 106 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 IGHV3-30-3P0DP02 117 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 IGHV3-30-5P0DP03 117 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 AP1S3Q96PC3 154 aa10.27□□□□□ -0.77
LIMS3-201ENST00000437679 TRBV7-3A0A075B6L6 115 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 F2Z2F3 143 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 F5H697 171 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 ERVFC1-1P60608 527 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 CACNG7P62955 275 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 NUDT10Q8NFP7 164 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 OCC1Q8TAD7 63 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 NUDT11Q96G61 164 aa10.26□□□□□ -0.77
LIMS3-201ENST00000437679 IBA57-AS1B1ANH7 110 aa10.25□□□□□ -0.77
LIMS3-201ENST00000437679 TOR2AQ5JU69 321 aa10.25□□□□□ -0.77
LIMS3-201ENST00000437679 EIF5A2Q9GZV4 153 aaKnown RBP10.25□□□□□ -0.77
LIMS3-201ENST00000437679 CEBPGP53567 150 aa10.24□□□□□ -0.77
LIMS3-201ENST00000437679 UBE2D3P61077 147 aa10.24□□□□□ -0.77
LIMS3-201ENST00000437679 UBE2D2P62837 147 aa10.24□□□□□ -0.77
LIMS3-201ENST00000437679 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.24□□□□□ -0.77
LIMS3-201ENST00000437679 OR10G8Q8NGN5 311 aa10.24□□□□□ -0.77
LIMS3-201ENST00000437679 K7EN84 100 aa10.23□□□□□ -0.77
LIMS3-201ENST00000437679 PSCAO43653 123 aa10.23□□□□□ -0.77
LIMS3-201ENST00000437679 LYZL1Q6UWQ5 148 aa10.23□□□□□ -0.77
LIMS3-201ENST00000437679 NEXN-AS1Q8NBZ9 246 aa10.23□□□□□ -0.77
LIMS3-201ENST00000437679 RNASE7Q9H1E1 156 aaKnown RBP10.23□□□□□ -0.77
LIMS3-201ENST00000437679 RPP21Q9H633 154 aaKnown RBP10.23□□□□□ -0.77
LIMS3-201ENST00000437679 URGCP-MRPS24S4R325 110 aa10.23□□□□□ -0.77
LIMS3-201ENST00000437679 KIAA1109Q2LD37 5005 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 HERC2O95714 4834 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 NDUFS6O75380 124 aaKnown RBP10.22□□□□□ -0.77
LIMS3-201ENST00000437679 MGPP08493 103 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 TRGC1P0CF51 173 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 KRTAP10-2P60368 255 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 FAM210AQ96ND0 272 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 Q9HAA7 133 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 KIF25-AS1Q9Y6Z4 181 aa10.22□□□□□ -0.77
LIMS3-201ENST00000437679 A0A087WTM6 91 aa10.21□□□□□ -0.77
LIMS3-201ENST00000437679 LAGE3Q14657 143 aa10.21□□□□□ -0.77
LIMS3-201ENST00000437679 WDR73Q6P4I2 378 aa10.21□□□□□ -0.77
LIMS3-201ENST00000437679 LRP1BQ9NZR2 4599 aa10.2□□□□□ -0.78
LIMS3-201ENST00000437679 H7C1H1 209 aa10.2□□□□□ -0.78
LIMS3-201ENST00000437679 GATCO43716 136 aaKnown RBP10.2□□□□□ -0.78
LIMS3-201ENST00000437679 NTF3P20783 257 aa10.2□□□□□ -0.78
LIMS3-201ENST00000437679 CTRLP40313 264 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms