RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 SMIM17P0DL12 118 aa8.7□□□□□ -1.02
LINC00339-204ENST00000434233 UFSP1Q6NVU6 142 aa8.7□□□□□ -1.02
LINC00339-204ENST00000434233 SMIM15Q7Z3B0 74 aa8.7□□□□□ -1.02
LINC00339-204ENST00000434233 ZNF479Q96JC4 524 aa8.7□□□□□ -1.02
LINC00339-204ENST00000434233 AP1S3Q96PC3 154 aa8.7□□□□□ -1.02
LINC00339-204ENST00000434233 SAMD10Q9BYL1 202 aa8.7□□□□□ -1.02
LINC00339-204ENST00000434233 KIF25-AS1Q9Y6Z4 181 aa8.7□□□□□ -1.02
LINC00339-204ENST00000434233 TRAV10A0A0B4J240 114 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 RHODO00212 210 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 S100A8P05109 93 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 SLAQ13239 276 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 FHL2Q14192 279 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 C14orf178Q8N769 122 aaPredicted RBP8.69□□□□□ -1.02
LINC00339-204ENST00000434233 WWC2-AS2Q96NR7 200 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 TMEM191AQ9H0A3 160 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 DPH3P1Q9H4G8 78 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 SMCO4Q9NRQ5 59 aa8.69□□□□□ -1.02
LINC00339-204ENST00000434233 A0A087WWL8 130 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 DEFB131BA0A096LNP1 70 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 TRGV4A0A0C4DH28 118 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 A0A1B0GXF2 115 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 F5H768 121 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 IGHV3-53P01767 116 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 EVI2AP22794 236 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 LINC00315P59091 139 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 HBBP68871 147 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 MRPL54Q6P161 138 aaKnown RBP8.68□□□□□ -1.02
LINC00339-204ENST00000434233 RASL11AQ6T310 242 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 GATD1Q8NB37 220 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 URGCP-MRPS24S4R325 110 aa8.68□□□□□ -1.02
LINC00339-204ENST00000434233 COL7A1Q02388 2944 aa8.67□□□□□ -1.02
LINC00339-204ENST00000434233 HOXA5P20719 270 aa8.67□□□□□ -1.02
LINC00339-204ENST00000434233 CAMPP49913 170 aa8.67□□□□□ -1.02
LINC00339-204ENST00000434233 RAB4BP61018 213 aa8.67□□□□□ -1.02
LINC00339-204ENST00000434233 ELOBQ15370 118 aa8.67□□□□□ -1.02
LINC00339-204ENST00000434233 FAM74A4Q5TZK3 123 aa8.67□□□□□ -1.02
LINC00339-204ENST00000434233 PHLDA1Q8WV24 401 aaPredicted RBP8.67□□□□□ -1.02
LINC00339-204ENST00000434233 HHLA3Q9XRX5 114 aa8.67□□□□□ -1.02
LINC00339-204ENST00000434233 TRBV24-1A0A075B6N3 115 aa8.66□□□□□ -1.02
LINC00339-204ENST00000434233 IGHV3-73A0A0B4J1V6 119 aa8.66□□□□□ -1.02
LINC00339-204ENST00000434233 HTN3P15516 51 aa8.66□□□□□ -1.02
LINC00339-204ENST00000434233 GATA1P15976 413 aaPredicted RBP8.66□□□□□ -1.02
LINC00339-204ENST00000434233 COX19Q49B96 90 aa8.66□□□□□ -1.02
LINC00339-204ENST00000434233 FRZBQ92765 325 aa8.66□□□□□ -1.02
LINC00339-204ENST00000434233 PGPEP1Q9NXJ5 209 aa8.66□□□□□ -1.02
LINC00339-204ENST00000434233 PRO0255Q9UI72 69 aa8.66□□□□□ -1.02
LINC00339-204ENST00000434233 TRBV6-4A0A1B0GX49 114 aa8.65□□□□□ -1.02
LINC00339-204ENST00000434233 CRYBA4P53673 196 aa8.65□□□□□ -1.02
LINC00339-204ENST00000434233 FAM210BQ96KR6 192 aa8.65□□□□□ -1.02
LINC00339-204ENST00000434233 YPEL4Q96NS1 127 aa8.65□□□□□ -1.02
LINC00339-204ENST00000434233 F5H697 171 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 H3BNG1 76 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 RAB4AP20338 218 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 ZNF56Q15929 161 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 FAM104BQ5XKR9 115 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 TMEM88Q6PEY1 159 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 CEMP1Q6PRD7 247 aaPredicted RBP8.64□□□□□ -1.03
LINC00339-204ENST00000434233 Q6ZSN1 163 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 SLC25A29Q8N8R3 303 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 MUC7Q8TAX7 377 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 RNF185Q96GF1 192 aa8.64□□□□□ -1.03
LINC00339-204ENST00000434233 TGIF2-C20orf24A0A0A6YYL0 155 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 NUPR2A6NF83 97 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 PAX4O43316 350 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 MGPP08493 103 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 CBLN2Q8IUK8 224 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 AMN1Q8IY45 258 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 VSIG2Q96IQ7 327 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 PRADC1Q9BSG0 188 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 GNB1LQ9BYB4 327 aa8.63□□□□□ -1.03
LINC00339-204ENST00000434233 TRAV26-1A0A087WT03 109 aa8.62□□□□□ -1.03
LINC00339-204ENST00000434233 TRBV10-1A0A0K0K1A3 114 aa8.62□□□□□ -1.03
LINC00339-204ENST00000434233 H7C1H1 209 aa8.62□□□□□ -1.03
LINC00339-204ENST00000434233 K7EQD1 137 aa8.62□□□□□ -1.03
LINC00339-204ENST00000434233 RHOHQ15669 191 aa8.62□□□□□ -1.03
LINC00339-204ENST00000434233 TMEM136Q6ZRR5 245 aa8.62□□□□□ -1.03
LINC00339-204ENST00000434233 KLK5Q9Y337 293 aaPredicted RBP8.62□□□□□ -1.03
LINC00339-204ENST00000434233 A0A0J9YY99 117 aa8.61□□□□□ -1.03
LINC00339-204ENST00000434233 M0QY20 66 aa8.61□□□□□ -1.03
LINC00339-204ENST00000434233 SCO1O75880 301 aa8.61□□□□□ -1.03
LINC00339-204ENST00000434233 HLA-DQA1P01909 254 aa8.61□□□□□ -1.03
LINC00339-204ENST00000434233 MRPL51Q4U2R6 128 aaKnown RBP8.61□□□□□ -1.03
LINC00339-204ENST00000434233 SUMO4Q6EEV6 95 aa8.61□□□□□ -1.03
LINC00339-204ENST00000434233 MRAP2Q96G30 205 aa8.61□□□□□ -1.03
LINC00339-204ENST00000434233 COLCA2A8K830 154 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 IGLL5B9A064 214 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 C3orf84H3BNL1 204 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 MT-ND6P03923 174 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 TCTAP57738 103 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 MRPL23Q16540 153 aaKnown RBP8.6□□□□□ -1.03
LINC00339-204ENST00000434233 C15orf53Q8NAA6 179 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 DNAJC30Q96LL9 226 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 NIT2Q9NQR4 276 aa8.6□□□□□ -1.03
LINC00339-204ENST00000434233 PPP1R17O96001 155 aa8.59□□□□□ -1.03
LINC00339-204ENST00000434233 PPBPP02775 128 aa8.59□□□□□ -1.03
LINC00339-204ENST00000434233 GYPEP15421 78 aa8.59□□□□□ -1.03
LINC00339-204ENST00000434233 NEXN-AS1Q8NBZ9 246 aa8.59□□□□□ -1.03
LINC00339-204ENST00000434233 STAB2Q8WWQ8 2551 aa8.58□□□□□ -1.04
LINC00339-204ENST00000434233 TRBV7-3A0A075B6L6 115 aa8.58□□□□□ -1.04
LINC00339-204ENST00000434233 TRAV26-2A0A0B4J265 109 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms