RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CD3EP07766 207 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 ARL3P36405 182 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 ATXN8Q156A1 80 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 MUC4Q99102 2169 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 H7C2G1 150 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 LY6HO94772 140 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 MUSTN1Q8IVN3 82 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 DEFB124Q8NES8 71 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 FAM19A4Q96LR4 140 aa8.04□□□□□ -1.12
USP54-204ENST00000422491 TRAV8-4A0A0B4J246 113 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 EEF1AKMT3Q96AZ1 226 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 ABCA4P78363 2273 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 TRAV2A0A0B4J234 112 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 TRBV10-2A0A0K0K1G8 114 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 TMEM223A0PJW6 202 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 G3V318 75 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 LEPROTO15243 131 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 DEFB1P60022 68 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 HERV-K104P63124 156 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 TCF15Q12870 199 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 MINOS1Q5TGZ0 78 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 FAM159AQ6UWV7 190 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 APRG1Q8IVJ8 170 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 C15orf53Q8NAA6 179 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 MINOS1-NBL1R4GNA1 71 aa8.03□□□□□ -1.12
USP54-204ENST00000422491 TRBV7-1A0A0A6YYK4 115 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 VCYO14598 125 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 SUMO4Q6EEV6 95 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 SMIM20Q8N5G0 67 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 OR10J6PQ8NGY7 276 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 SVEP1Q4LDE5 3571 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 PIEZO2Q9H5I5 2752 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 SOCS3O14543 225 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 PRR30Q53SZ7 412 aaPredicted RBP8.02□□□□□ -1.13
USP54-204ENST00000422491 IGF2-ASQ6U949 168 aa8.02□□□□□ -1.13
USP54-204ENST00000422491 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.01□□□□□ -1.13
USP54-204ENST00000422491 TRBV30A0A0K0K1B3 111 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 LGALS9O00182 355 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 OVOL1O14753 267 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 IGHV4-39P01824 125 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 RNASE4P34096 147 aaKnown RBP8.01□□□□□ -1.13
USP54-204ENST00000422491 JPT2Q9H910 190 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 TRBV27A0A0K0K1C4 114 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 SDHAF1A6NFY7 115 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 H3BMM0 161 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 TRIAP1O43715 76 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 UBE2WQ96B02 151 aa8.01□□□□□ -1.13
USP54-204ENST00000422491 A0A0J9YX75 114 aa8□□□□□ -1.13
USP54-204ENST00000422491 M0R2P5 195 aa8□□□□□ -1.13
USP54-204ENST00000422491 Q1RN00 199 aa8□□□□□ -1.13
USP54-204ENST00000422491 C1orf122Q6ZSJ8 110 aa8□□□□□ -1.13
USP54-204ENST00000422491 MDFICQ9P1T7 246 aa8□□□□□ -1.13
USP54-204ENST00000422491 CACNA1BQ00975 2339 aa8□□□□□ -1.13
USP54-204ENST00000422491 LRBAP50851 2863 aa8□□□□□ -1.13
USP54-204ENST00000422491 ATMQ13315 3056 aa8□□□□□ -1.13
USP54-204ENST00000422491 IGHV1-69P01742 117 aa7.99□□□□□ -1.13
USP54-204ENST00000422491 ZNF22P17026 224 aaPredicted RBP7.99□□□□□ -1.13
USP54-204ENST00000422491 OPRPNQ99935 248 aaPredicted RBP7.99□□□□□ -1.13
USP54-204ENST00000422491 SPANXA1Q9NS26 97 aa7.99□□□□□ -1.13
USP54-204ENST00000422491 TRBV6-5A0A0K0K1A5 114 aa7.99□□□□□ -1.13
USP54-204ENST00000422491 F6UB75 175 aa7.99□□□□□ -1.13
USP54-204ENST00000422491 BEX4Q9NWD9 120 aaPredicted RBP7.99□□□□□ -1.13
USP54-204ENST00000422491 IGHV3-64A0A075B6Q5 118 aa7.99□□□□□ -1.13
USP54-204ENST00000422491 A0A087WWL8 130 aa7.99□□□□□ -1.13
USP54-204ENST00000422491 MRPL23Q16540 153 aaKnown RBP7.99□□□□□ -1.13
USP54-204ENST00000422491 A0A0J9YXY3 114 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 H7C423 109 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 LINC01560Q8TB33 94 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 LITAFQ99732 161 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 ZNF580Q9UK33 172 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 NSUN5P1Q3KNT7 163 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 C2orf82Q6UX34 121 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 UNQ9165/PRO28630Q6UXU0 137 aa7.98□□□□□ -1.13
USP54-204ENST00000422491 FAM240AA0A1B0GVK7 77 aa7.97□□□□□ -1.13
USP54-204ENST00000422491 FOXC1Q12948 553 aa7.97□□□□□ -1.13
USP54-204ENST00000422491 Q8NA96 180 aa7.97□□□□□ -1.13
USP54-204ENST00000422491 H3BT86 120 aa7.97□□□□□ -1.13
USP54-204ENST00000422491 CACNA1HO95180 2353 aa7.97□□□□□ -1.13
USP54-204ENST00000422491 MEIG1Q5JSS6 88 aa7.97□□□□□ -1.13
USP54-204ENST00000422491 ZNF256Q9Y2P7 627 aaPredicted RBP7.97□□□□□ -1.13
USP54-204ENST00000422491 ICOSQ9Y6W8 199 aa7.97□□□□□ -1.13
USP54-204ENST00000422491 F5H697 171 aa7.96□□□□□ -1.13
USP54-204ENST00000422491 ZFP36P26651 326 aaKnown RBP7.96□□□□□ -1.13
USP54-204ENST00000422491 RHOHQ15669 191 aa7.96□□□□□ -1.13
USP54-204ENST00000422491 DEFB121Q5J5C9 76 aa7.96□□□□□ -1.13
USP54-204ENST00000422491 SIRPDQ9H106 197 aa7.96□□□□□ -1.13
USP54-204ENST00000422491 KLLNB2CW77 178 aa7.96□□□□□ -1.14
USP54-204ENST00000422491 UBE2E1P51965 193 aa7.96□□□□□ -1.14
USP54-204ENST00000422491 RELNP78509 3460 aa7.96□□□□□ -1.14
USP54-204ENST00000422491 A0A0J9YXV3 536 aa7.95□□□□□ -1.14
USP54-204ENST00000422491 TRBV7-7A0A0K0K1E9 115 aa7.95□□□□□ -1.14
USP54-204ENST00000422491 IGLV4-3A0A075B6K6 122 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 M0QY20 66 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 BRI3O95415 125 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 TRBV12-3P01733 135 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 IGHV3-30-3P0DP02 117 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 C19orf54Q5BKX5 351 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 C20orf203Q8NBC4 194 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 ANKRD11Q6UB99 2663 aaPredicted RBP7.94□□□□□ -1.14
USP54-204ENST00000422491 FAM223BA6NKX1 122 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms