RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 UBE2D1P51668 147 aa7.15□□□□□ -1.26
COL28A1-201ENST00000399429 PIMREGQ9BSJ6 248 aa7.15□□□□□ -1.26
COL28A1-201ENST00000399429 IGHG3P01860 377 aa7.15□□□□□ -1.26
COL28A1-201ENST00000399429 CTSGP08311 255 aa7.15□□□□□ -1.26
COL28A1-201ENST00000399429 UBE2D3P61077 147 aa7.15□□□□□ -1.26
COL28A1-201ENST00000399429 UBE2D2P62837 147 aa7.15□□□□□ -1.26
COL28A1-201ENST00000399429 TMEM219Q86XT9 240 aa7.15□□□□□ -1.26
COL28A1-201ENST00000399429 ATOX1O00244 68 aa7.15□□□□□ -1.27
COL28A1-201ENST00000399429 WT1P19544 449 aaPredicted RBP7.15□□□□□ -1.27
COL28A1-201ENST00000399429 RHOHQ15669 191 aa7.15□□□□□ -1.27
COL28A1-201ENST00000399429 ANKHD1Q8IWZ3 2542 aaKnown RBP7.15□□□□□ -1.27
COL28A1-201ENST00000399429 ZFHX2Q9C0A1 2572 aaPredicted RBP7.15□□□□□ -1.27
COL28A1-201ENST00000399429 LINC00158P58513 81 aa7.15□□□□□ -1.27
COL28A1-201ENST00000399429 VMO1Q7Z5L0 202 aa7.15□□□□□ -1.27
COL28A1-201ENST00000399429 SPANXDQ9BXN6 97 aa7.15□□□□□ -1.27
COL28A1-201ENST00000399429 KLK5Q9Y337 293 aaPredicted RBP7.15□□□□□ -1.27
COL28A1-201ENST00000399429 PTPRSQ13332 1948 aa7.15□□□□□ -1.27
COL28A1-201ENST00000399429 PIEZO2Q9H5I5 2752 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 A0A0B4J2C4 111 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 JPT2Q9H910 190 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 VCANP13611 3396 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 CSPG4Q6UVK1 2322 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 FSTL3O95633 263 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 LINC00643Q86TS7 51 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 NRACQ8N912 160 aa7.14□□□□□ -1.27
COL28A1-201ENST00000399429 TRAV12-2A0A075B6T6 113 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 I3L3M4 83 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 ATP6V0E1O15342 81 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 SUMO4Q6EEV6 95 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 PTPN13Q12923 2485 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 SMIM9A6NGZ8 99 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 PAX4O43316 350 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 BUB3O43684 328 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 KLK9Q9UKQ9 250 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 RANBP2P49792 3224 aaKnown RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 CRYGBP07316 175 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 ZNF22P17026 224 aaPredicted RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 DNAJC30Q96LL9 226 aa7.13□□□□□ -1.27
COL28A1-201ENST00000399429 MBD3L4A6NDZ8 208 aaPredicted RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 MBD3L3A6NE82 208 aaPredicted RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 MBD3L5A6NJ08 208 aaPredicted RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 ZNF672Q499Z4 452 aaPredicted RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 MBD3L2Q8NHZ7 208 aaPredicted RBP7.13□□□□□ -1.27
COL28A1-201ENST00000399429 EXPH5Q8NEV8 1989 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 ADAMTS20P59510 1910 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 IGHV3-38A0A0C4DH36 116 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 SOCS3O14543 225 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 Q6Q795 121 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 IGLV11-55A0A075B6I3 123 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 RBMY1BA6NDE4 496 aaKnown RBP7.12□□□□□ -1.27
COL28A1-201ENST00000399429 RBMY1EA6NEQ0 496 aaKnown RBP7.12□□□□□ -1.27
COL28A1-201ENST00000399429 RBMY1DP0C7P1 496 aaKnown RBP7.12□□□□□ -1.27
COL28A1-201ENST00000399429 RBMY1A1P0DJD3 496 aaKnown RBP7.12□□□□□ -1.27
COL28A1-201ENST00000399429 RBMY1CP0DJD4 496 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 FHL3Q13643 280 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 DSCAMO60469 2012 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 LINC01619G3V211 115 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 PRR30Q53SZ7 412 aaPredicted RBP7.12□□□□□ -1.27
COL28A1-201ENST00000399429 SDIM1Q6ZPB5 146 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 FAM19A5Q7Z5A7 132 aaPredicted RBP7.12□□□□□ -1.27
COL28A1-201ENST00000399429 RHPN1-AS1Q9BWJ2 59 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 VPS13AQ96RL7 3174 aa7.12□□□□□ -1.27
COL28A1-201ENST00000399429 IGHV3-30-3P0DP02 117 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 A0A0J9YXY3 114 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 THBDP07204 575 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 C11orf21Q9P2W6 132 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 TRBV7-1A0A0A6YYK4 115 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 IGF1P05019 195 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 P0DMU3 169 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 FAM231AP0DMU4 169 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 FAM231CP0DMU5 169 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 DYNLRB2Q8TF09 96 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 FANCD2OSQ96PS1 177 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 TIMM17AQ99595 171 aa7.11□□□□□ -1.27
COL28A1-201ENST00000399429 CSDC2Q9Y534 153 aaKnown RBP7.11□□□□□ -1.27
COL28A1-201ENST00000399429 C11orf68Q9H3H3 251 aaKnown RBP7.1□□□□□ -1.27
COL28A1-201ENST00000399429 Q9H8V8 135 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 LRP4O75096 1905 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 FREM2Q5SZK8 3169 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 SPINK13Q1W4C9 94 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 C8orf31Q8N9H6 132 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 Q9HAA7 133 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 SPANXCQ9NY87 97 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 TMEM243Q9BU79 118 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 PTPRBP23467 1997 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 H7C423 109 aa7.1□□□□□ -1.27
COL28A1-201ENST00000399429 DAZ2Q13117 558 aaKnown RBP7.1□□□□□ -1.27
COL28A1-201ENST00000399429 RBMY1FQ15415 496 aaKnown RBP7.1□□□□□ -1.27
COL28A1-201ENST00000399429 DAZ4Q86SG3 579 aaKnown RBP7.1□□□□□ -1.27
COL28A1-201ENST00000399429 DAZ1Q9NQZ3 744 aaKnown RBP7.1□□□□□ -1.27
COL28A1-201ENST00000399429 DAZ3Q9NR90 486 aaKnown RBP7.1□□□□□ -1.27
COL28A1-201ENST00000399429 OVOL3O00110 214 aa7.09□□□□□ -1.27
COL28A1-201ENST00000399429 CEMP1Q6PRD7 247 aaPredicted RBP7.09□□□□□ -1.27
COL28A1-201ENST00000399429 LINC01587Q99440 93 aa7.09□□□□□ -1.27
COL28A1-201ENST00000399429 TRBV30A0A0K0K1B3 111 aa7.09□□□□□ -1.27
COL28A1-201ENST00000399429 E7EQL1 145 aa7.09□□□□□ -1.27
COL28A1-201ENST00000399429 IGLV1-47P01700 117 aa7.09□□□□□ -1.27
COL28A1-201ENST00000399429 LINC00574Q9H8X3 128 aa7.09□□□□□ -1.27
COL28A1-201ENST00000399429 PKIGQ9Y2B9 76 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms