RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 IGKV1-17P01599 117 aa8.73□□□□□ -1.01
TTC28-201ENST00000397906 RPL39P62891 51 aaKnown RBP8.73□□□□□ -1.01
TTC28-201ENST00000397906 GTSF1Q8WW33 167 aa8.73□□□□□ -1.01
TTC28-201ENST00000397906 LOXL1Q08397 574 aaPredicted RBP8.73□□□□□ -1.01
TTC28-201ENST00000397906 C9orf47Q6ZRZ4 202 aa8.73□□□□□ -1.01
TTC28-201ENST00000397906 TM2D2Q9BX73 214 aa8.73□□□□□ -1.01
TTC28-201ENST00000397906 MSRB1Q9NZV6 116 aa8.73□□□□□ -1.01
TTC28-201ENST00000397906 PRO1854Q9UHT4 67 aa8.73□□□□□ -1.01
TTC28-201ENST00000397906 TNRC6AQ8NDV7 1962 aaKnown RBP8.73□□□□□ -1.01
TTC28-201ENST00000397906 LGALS9BQ3B8N2 356 aa8.72□□□□□ -1.01
TTC28-201ENST00000397906 LGALS9CQ6DKI2 356 aa8.72□□□□□ -1.01
TTC28-201ENST00000397906 MAP6D1Q9H9H5 199 aa8.72□□□□□ -1.01
TTC28-201ENST00000397906 LENEPQ9Y5L5 61 aa8.72□□□□□ -1.01
TTC28-201ENST00000397906 ODF3L1Q8IXM7 274 aa8.72□□□□□ -1.01
TTC28-201ENST00000397906 COX7B2Q8TF08 81 aa8.72□□□□□ -1.01
TTC28-201ENST00000397906 PRB2P02812 416 aaPredicted RBP8.71□□□□□ -1.01
TTC28-201ENST00000397906 UTF1Q5T230 341 aa8.71□□□□□ -1.01
TTC28-201ENST00000397906 A6NDX4 124 aa8.71□□□□□ -1.01
TTC28-201ENST00000397906 TRAV26-1A0A087WT03 109 aa8.71□□□□□ -1.01
TTC28-201ENST00000397906 TRACP01848 142 aa8.71□□□□□ -1.01
TTC28-201ENST00000397906 INSL3P51460 131 aa8.71□□□□□ -1.01
TTC28-201ENST00000397906 LINC01548A6NM66 108 aa8.71□□□□□ -1.02
TTC28-201ENST00000397906 MDFICQ9P1T7 246 aa8.71□□□□□ -1.02
TTC28-201ENST00000397906 CACNA1HO95180 2353 aa8.71□□□□□ -1.02
TTC28-201ENST00000397906 NDUFA1O15239 70 aa8.71□□□□□ -1.02
TTC28-201ENST00000397906 CEP192Q8TEP8 1941 aa8.71□□□□□ -1.02
TTC28-201ENST00000397906 SPANXA1Q9NS26 97 aa8.71□□□□□ -1.02
TTC28-201ENST00000397906 GPHB5Q86YW7 130 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 TMEM263Q8WUH6 116 aaKnown RBP8.7□□□□□ -1.02
TTC28-201ENST00000397906 IGLC2P0DOY2 106 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 IGLC3P0DOY3 106 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 LINC00482Q8N8I6 264 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 ZFP2Q6ZN57 461 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 ORMDL1Q9P0S3 153 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 IGLV1-47P01700 117 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 HIGD2BQ4VC39 106 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 WI2-2373I1.2A0A1W2PRP0 233 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 PATE2Q6UY27 113 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 IL17DQ8TAD2 202 aa8.7□□□□□ -1.02
TTC28-201ENST00000397906 TRBV20-1A0A075B6N2 111 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 LRRC75A-AS1Q8N1F1 130 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 FBXL19-AS1Q494R0 122 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 C11orf52Q96A22 123 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 COX8AP10176 69 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 FAM208BQ5VWN6 2430 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 A0A0J9YXV3 536 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 H3BMG7 143 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 BVES-AS1Q5T3Y7 98 aa8.69□□□□□ -1.02
TTC28-201ENST00000397906 TNRC6BQ9UPQ9 1833 aaKnown RBP8.68□□□□□ -1.02
TTC28-201ENST00000397906 Q6YL49 198 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 C22orf34Q6ZV56 151 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 K7EMI3 77 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 ZNF124Q15973 351 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 HERV-K104P63124 156 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 COX11Q9Y6N1 276 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 PTPRQQ9UMZ3 2332 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 HILS1P60008 231 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 TP53TG3Q9ULZ0 132 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 SND1-IT1Q9HBX3 110 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 LMO4P61968 165 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 UBE2V1Q13404 147 aa8.68□□□□□ -1.02
TTC28-201ENST00000397906 P0DMU3 169 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 FAM231AP0DMU4 169 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 FAM231CP0DMU5 169 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 K7EMT4 169 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 CCL25O15444 150 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 FUSP35637 526 aaKnown RBP eCLIP8.67□□□□□ -1.02
TTC28-201ENST00000397906 CCDC140Q96MF4 163 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 SPAG11BQ08648 103 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 M0R2N4 97 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 TNFRSF13BO14836 293 aaPredicted RBP8.67□□□□□ -1.02
TTC28-201ENST00000397906 DEFB131BA0A096LNP1 70 aa8.67□□□□□ -1.02
TTC28-201ENST00000397906 C9orf118A6NHY6 69 aa8.66□□□□□ -1.02
TTC28-201ENST00000397906 DLEU1O43261 78 aa8.66□□□□□ -1.02
TTC28-201ENST00000397906 PCP2Q8IVA1 136 aa8.66□□□□□ -1.02
TTC28-201ENST00000397906 BAALC-AS2P0C853 105 aa8.66□□□□□ -1.02
TTC28-201ENST00000397906 C10orf99Q6UWK7 81 aa8.66□□□□□ -1.02
TTC28-201ENST00000397906 CRYGDP07320 174 aa8.66□□□□□ -1.02
TTC28-201ENST00000397906 LINC00269Q8N2A0 174 aa8.66□□□□□ -1.02
TTC28-201ENST00000397906 IGLV2-18A0A075B6J9 118 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 PRO0255Q9UI72 69 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.65□□□□□ -1.02
TTC28-201ENST00000397906 GAGE12HA6NDE8 117 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 FAM222AQ5U5X8 452 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 PLCE1Q9P212 2302 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 IGLV2-14P01704 120 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 CEMP1Q6PRD7 247 aaPredicted RBP8.65□□□□□ -1.02
TTC28-201ENST00000397906 SMR3AQ99954 134 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 TMEM89A2RUT3 159 aa8.65□□□□□ -1.02
TTC28-201ENST00000397906 Q6ZTI0 123 aa8.65□□□□□ -1.03
TTC28-201ENST00000397906 MED13LQ71F56 2210 aa8.65□□□□□ -1.03
TTC28-201ENST00000397906 A0A0J9YX75 114 aa8.64□□□□□ -1.03
TTC28-201ENST00000397906 ETDBQ3ZM63 59 aa8.64□□□□□ -1.03
TTC28-201ENST00000397906 SHISA2Q6UWI4 295 aa8.64□□□□□ -1.03
TTC28-201ENST00000397906 PLA2G2AP14555 144 aa8.64□□□□□ -1.03
TTC28-201ENST00000397906 CRYBA4P53673 196 aa8.64□□□□□ -1.03
TTC28-201ENST00000397906 NUP210LQ5VU65 1888 aa8.63□□□□□ -1.03
TTC28-201ENST00000397906 LYPD6BQ8NI32 183 aa8.63□□□□□ -1.03
TTC28-201ENST00000397906 OPRPNQ99935 248 aaPredicted RBP8.63□□□□□ -1.03
TTC28-201ENST00000397906 ZNF747Q9BV97 191 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms